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Fix many issues with examples #669

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Fix many issues with examples #669

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00a75d5
Add fixes
stxue1 Jun 19, 2024
b0b0713
update versions
jdidion Jun 25, 2024
6401dfa
Update SPEC.md (#660)
stxue1 Jun 25, 2024
5f139ec
Specify container with `lspci` for GPU WDL example. (#659)
stxue1 Jun 25, 2024
28123ee
fix #661
jdidion Jun 26, 2024
0983069
update changelog, fix #662
jdidion Jun 26, 2024
4535d55
update changelog, fix #663
jdidion Jun 26, 2024
71070a0
update changelog, fix #664
jdidion Jun 26, 2024
c5c7c0f
update changelog, fix #665, #666
jdidion Jun 26, 2024
caff59d
update changelog, fix #668
jdidion Jun 26, 2024
6453a92
fix #667
jdidion Jun 26, 2024
59bbd40
update changelog
jdidion Jun 26, 2024
41ffadd
Various fixes to get most of the tests running
stxue1 Jul 3, 2024
4935071
Move infile to input
stxue1 Jul 3, 2024
7ea277d
Bring back whitespace as that should be supported by the spec
stxue1 Jul 3, 2024
28f3503
Bring back whitespace as that should be supported by the spec
stxue1 Jul 3, 2024
e396d64
Convert string back to int as coercion is apparenlty not part of the
stxue1 Jul 3, 2024
ae73a6f
Merge branch 'wdl-1.1-fixes' of github.com:stxue1/wdl into wdl-1.1-fixes
stxue1 Jul 3, 2024
c5a44a5
Revert read_boolean changes
stxue1 Jul 3, 2024
d2a8b9e
671: fix python json serialization of string list
jdidion Jul 24, 2024
c0cd737
update readme
jdidion Jul 24, 2024
8da3e0a
Merge branch 'wdl-1.1.3' into wdl-1.1-fixes
jdidion Jul 24, 2024
82acf71
Merge pull request #674 from stxue1/wdl-1.1-fixes
jdidion Jul 24, 2024
81dc127
fix
jdidion Jul 24, 2024
1626777
fix
jdidion Jul 24, 2024
20ff54d
use index_id rather than hard-coded path, add missing variable
jdidion Jul 26, 2024
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update versions
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@jdidion
jdidion committed Jun 25, 2024
commit b0b0713bc615e6d0521f10551a0971cd921d0858
2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -14,7 +14,7 @@ The WDL *language* has a two-number version (e.g., `1.1`).
An increase in the minor (second) version number (e.g., `1.0` to `1.1`) indicates the addition of, or non-breaking changes to, the language or standard library functions.
An increase in the major (first) version number (e.g., `1.0` to `2.0`) indicates that breaking changes have been made.

The WDL *specification* has a three-number version (e.g., `1.1.2`).
The WDL *specification* has a three-number version (e.g., `1.1.3`).
The specification version tracks the language version, but there may also be patch releases (indicated by a change to the patch, or third, version number) that include fixes for typos, additional examples, or non-breaking clarifications of ambiguous language.

## Language Specifications
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3 changes: 2 additions & 1 deletion SPEC.md
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@@ -1,11 +1,12 @@
# Workflow Description Language (WDL)

This is version 1.1.2 of the Workflow Description Language (WDL) specification. It describes WDL `version 1.1`. It introduces a number of new features (denoted by the ✨ symbol) and clarifications to the [1.0](https://github.com/openwdl/wdl/blob/main/versions/1.0/SPEC.md) version of the specification. It also deprecates several aspects of the 1.0 specification that will be removed in the [next major WDL version](https://github.com/openwdl/wdl/blob/wdl-2.0/SPEC.md) (denoted by the 🗑 symbol).
This is version 1.1.3 of the Workflow Description Language (WDL) specification. It describes WDL `version 1.1`. It introduces a number of new features (denoted by the ✨ symbol) and clarifications to the [1.0](https://github.com/openwdl/wdl/blob/main/versions/1.0/SPEC.md) version of the specification. It also deprecates several aspects of the 1.0 specification that will be removed in the [next major WDL version](https://github.com/openwdl/wdl/blob/wdl-2.0/SPEC.md) (denoted by the 🗑 symbol).

## Revisions

Revisions to this specification are made periodically in order to correct errors, clarify language, or add additional examples. Revisions are released as "patches" to the specification, i.e., the third number in the specification version is incremented. No functionality is added or removed after the initial revision of the specification is ratified.

* [1.1.3]():
* [1.1.2](https://github.com/openwdl/wdl/tree/release-1.1.2/SPEC.md): 2024-04-12
* [1.1.1](https://github.com/openwdl/wdl/tree/release-1.1.1/SPEC.md): 2023-10-04
* [1.1.0](https://github.com/openwdl/wdl/tree/release-1.1.0/SPEC.md): 2021-01-29
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