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@openvax

OpenVax

Open source software for personalized cancer vaccines

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  1. pyensembl pyensembl Public

    Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

    Python 374 65

  2. varcode varcode Public

    Library for manipulating genomic variants and predicting their effects

    Python 81 25

  3. mhcflurry mhcflurry Public

    Peptide-MHC I binding affinity prediction

    Python 193 58

  4. vaxrank vaxrank Public

    Ranked vaccine peptides for personalized cancer immunotherapy

    Python 53 21

  5. mhctools mhctools Public

    Python interface to running command-line and web-based MHC binding predictors

    Python 89 21

  6. neoantigen-vaccine-pipeline neoantigen-vaccine-pipeline Public

    Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

    Python 75 25

Repositories

Showing 10 of 44 repositories
  • vaxrank Public

    Ranked vaccine peptides for personalized cancer immunotherapy

    openvax/vaxrank’s past year of commit activity
    Python 53 Apache-2.0 21 44 2 Updated Oct 7, 2024
  • pepdata Public

    Python interface to amino acid properties and IEDB

    openvax/pepdata’s past year of commit activity
    Python 49 Apache-2.0 17 5 1 Updated Oct 7, 2024
  • mhctools Public

    Python interface to running command-line and web-based MHC binding predictors

    openvax/mhctools’s past year of commit activity
    Python 89 Apache-2.0 21 17 0 Updated Oct 4, 2024
  • isovar Public

    Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence

    openvax/isovar’s past year of commit activity
    Python 25 Apache-2.0 13 34 0 Updated Oct 4, 2024
  • mhcflurry Public

    Peptide-MHC I binding affinity prediction

    openvax/mhcflurry’s past year of commit activity
    Python 193 Apache-2.0 58 7 1 Updated Oct 2, 2024
  • gene-lists Public

    Gene lists related to cancer immunotherapy

    openvax/gene-lists’s past year of commit activity
    Jupyter Notebook 13 Apache-2.0 3 1 0 Updated Sep 11, 2024
  • varlens Public

    commandline manipulation of genomic variants and NGS reads

    openvax/varlens’s past year of commit activity
    Python 19 Apache-2.0 2 6 0 Updated Sep 6, 2024
  • neoantigen-vaccine-pipeline Public

    Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

    openvax/neoantigen-vaccine-pipeline’s past year of commit activity
    Python 75 Apache-2.0 25 48 2 Updated Aug 7, 2024
  • varcode Public

    Library for manipulating genomic variants and predicting their effects

    openvax/varcode’s past year of commit activity
    Python 81 Apache-2.0 25 33 0 Updated Jul 3, 2024
  • pyensembl Public

    Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

    openvax/pyensembl’s past year of commit activity
    Python 374 Apache-2.0 65 68 3 Updated Jun 4, 2024

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