Application to assign secondary structure to proteins

Collection of interaction and molecule parameters for the Martini3 force-field

Describe and apply transformation on molecular structures and topologies

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

Packmol - Initial configurations for molecular dynamics simulations

Software to characterize membrane shape and curvature

A Framework for Metropolis Monte Carlo Simulation of Molecular Systems