GitHub - occamsRZR/svm_proteins: Perl program/modules used to analyze proteins using support vector machines.

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Perl program/modules used to analyze proteins using support vector machines.

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
modules		modules
shell_scripts		shell_scripts
README		README
infile_neg		infile_neg
infile_pos		infile_pos
svm.pl		svm.pl

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This is a simple perl program that will take in positive and negative data to train a SVM.  You can then provide a genome to mine against.  The results are then reciprocally BLASTed.  Each result is then aligned with the positive data and phylogenetic analysis is performed on each result.