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@ocbe-uio

Oslo Centre for Biostatistics and Epidemiology

This is where we host some of the scientific software we produce at OCBE, a joint center between the University of Oslo and the Oslo University Hospital.

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  1. BayesMallows BayesMallows Public

    R-package for Bayesian preference learning with the Mallows rank model.

    R 21 9

  2. teaching_mf9130e teaching_mf9130e Public

    Course material for MF9130E

    R 13 9

  3. DIscBIO DIscBIO Public

    A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics

    Jupyter Notebook 11 5

  4. rBAPS rBAPS Public

    R implementation of the BAPS software for Bayesian Analysis of Population Structure

    R 10 4

  5. survomics survomics Public

    Tutorial on survival modeling with omics data

    TeX 10 1

  6. trajpy trajpy Public

    Trajpy - empowering feature engineering for trajectory analysis across domains.

    Python 6 3

Repositories

Showing 10 of 51 repositories
  • TruncExpFam Public

    R package to generate data related to the Truncated Exponential Family

    ocbe-uio/TruncExpFam’s past year of commit activity
    R 0 GPL-3.0 1 3 0 Updated Jul 3, 2024
  • psbcSpeedUp Public

    Penalized Semiparametric Bayesian Cox Models

    ocbe-uio/psbcSpeedUp’s past year of commit activity
    C++ 3 GPL-3.0 1 0 0 Updated Jul 3, 2024
  • rBAPS Public

    R implementation of the BAPS software for Bayesian Analysis of Population Structure

    ocbe-uio/rBAPS’s past year of commit activity
    R 10 GPL-3.0 4 9 (2 issues need help) 0 Updated Jul 2, 2024
  • BayesMallows Public

    R-package for Bayesian preference learning with the Mallows rank model.

    ocbe-uio/BayesMallows’s past year of commit activity
    R 21 GPL-3.0 9 8 0 Updated Jul 2, 2024
  • pCRscore Public

    Python package to calculate pCR scores

    ocbe-uio/pCRscore’s past year of commit activity
    Python 0 GPL-3.0 0 1 0 Updated Jul 1, 2024
  • bd4predict Public
    ocbe-uio/bd4predict’s past year of commit activity
    Python 0 0 0 0 Updated Jul 1, 2024
  • BAPS Public

    Bayesian Analysis of Population Structure

    ocbe-uio/BAPS’s past year of commit activity
    MATLAB 0 0 4 0 Updated Jun 26, 2024
  • MADMMplasso Public

    Multi variate multi response 'ADMM' with interaction effects

    ocbe-uio/MADMMplasso’s past year of commit activity
    R 0 GPL-3.0 0 8 (1 issue needs help) 0 Updated Jun 26, 2024
  • BayesSurvive Public

    Bayesian survival models for high-dimensional data

    ocbe-uio/BayesSurvive’s past year of commit activity
    R 1 GPL-3.0 1 1 0 Updated Jun 21, 2024
  • public-slides Public

    A repository for slides presented to the public or publicly-available slides

    ocbe-uio/public-slides’s past year of commit activity
    Jupyter Notebook 1 CC-BY-SA-4.0 0 0 0 Updated May 30, 2024
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