Tumor Mutational Burden

A collection of tools for Hi-C data analysis

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.

(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

Aggregate results from bioinformatics analyses across many samples into a single report.

A cool place to store your Hi-C

OLD REPOSITORY - Go to

Allele-specific alignment sorting

Normalizing Hi-C contact counts efficiently

code associated with crane-nature-2015, 10.1038/nature14450

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau