in-silico modeling of TRP28 protein for docking analysis of orfamide A, a toxin of microalgae C. reinhardtii

Code for C++ beginner

files that assisted in development of mbovpan, but are not necessarily needed in the main repo

Multiomic integration of metagenomic and metatranscriptomic data

python scripts to analyze multi-sequence alignment (FASTA) data

takes the gubbins GFF output and creates a heatmap csv for further processing

a command line tool for pangenome creation based on metadata

A repository for the scripts I developed to do pangenome inference using SPAdes, prokka, and Roary.

All my presentations through the PhD process

an R command line tool to find outliers in data unsupervised

A tool to access NCBI SRA Run Selector metadata

extract no. of SNP, Insertions, and Deletions

A tool to trim multi-sequence alignment for gaps and ambiguity codes.

bash script to filter out poor mapping quality SNPs called from vSNP program and PE/PPE genes from analysis.

Generate a PSSM with sequence test data. non concurrent

take VCF files (preferably filtered) and creates fasta output for SNP positions.

pairwise BLAST, but with a hint of Noah

Salvador Lab in-house variant calling script for Sapelo2 (still in development )

Cluster scripts and programs

Transmission Simulator based on Multi-Host SIR model parameters.

Web App Messaging with Machine Learning features built in place