A fast tool for detecting and decomposing segmental duplications in genome assemblies

Effector prediction pipeline based on protein properties.

A list of interesting genome browser or genome-browser-like implementations

A software to assemble chloroplast and mitochodrial genomes using PacBio data

A single molecule sequence assembler for genomes large and small.

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…