This release of Mindboggle enables a user to execute (1) recon-all in FreeSurfer, (2) antsCorticalThickness.sh in ANTs, and (3) mindboggle with a single docker command:

docker run --rm -ti -v $HOST:$DOCK nipy/mindboggle $IMAGE --id $ID

The container is run as an executable, which in turn runs a nipype script called "mindboggle123." The user doesn't have to enter the bash shell inside the container as before, unless finer control over the individual commands is required.