Skip to content
@nipreps

NeuroImaging PREProcessing toolS

README.md

NiPreps (NeuroImaging PREProcessing toolS)

Please visit www.nipreps.org for a more comprehensive description of this community. Don't forget to also learn about the sister initiative www.templateflow.org.

News and some discussions take place at the Nipreps GitHub discussions.

About

The current neuroimaging workflow has matured into a large chain of processing and analysis steps involving a large number of experts, across imaging modalities and applications. The development and fast adoption of fMRIPrep have revealed that neuroscientists need tools that simplify their research workflow, provide visual reports and checkpoints, and engender trust in the tool itself. The NiPreps framework extends fMRIPrep's approach and principles to new imaging modalities. The vision for NiPreps is to provide end-users (i.e., researchers) with applications that allow them to perform quality control smoothly and to prepare their data for modeling and statistical analysis.

Acknowledgments

This work is steered and maintained by the NiPreps Community. The development of this framework is supported the NIMH (RF1MH121867, RAP, OE).

Pinned Loading

  1. fmriprep fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    HTML 609 287

  2. dmriprep dmriprep Public

    dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    Python 63 24

  3. smriprep smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    Python 126 37

  4. mriqc mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 284 128

Repositories

Showing 10 of 44 repositories
  • eddymotion Public

    Open-source eddy-current and head-motion correction for dMRI.

    nipreps/eddymotion’s past year of commit activity
    Python 11 Apache-2.0 16 31 (1 issue needs help) 8 Updated Jul 3, 2024
  • nirodents Public
    nipreps/nirodents’s past year of commit activity
    Python 12 Apache-2.0 3 8 0 Updated Jul 2, 2024
  • nireports Public

    The NiPreps' Reporting and Visualization system - report templates and "reportlets"

    nipreps/nireports’s past year of commit activity
    Python 6 Apache-2.0 19 14 (1 issue needs help) 3 Updated Jul 2, 2024
  • sdcflows Public

    Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

    nipreps/sdcflows’s past year of commit activity
    Python 30 Apache-2.0 24 31 2 Updated Jun 27, 2024
  • niworkflows Public

    Common workflows for MRI (anatomical, functional, diffusion, etc)

    nipreps/niworkflows’s past year of commit activity
    Python 85 Apache-2.0 51 56 (3 issues need help) 12 Updated Jun 22, 2024
  • fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    nipreps/fmriprep’s past year of commit activity
    HTML 609 Apache-2.0 287 277 (24 issues need help) 11 Updated Jun 22, 2024
  • nipreps.github.io Public

    The NiPreps landing page

    nipreps/nipreps.github.io’s past year of commit activity
    Python 2 CC0-1.0 8 8 2 Updated Jun 21, 2024
  • mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    nipreps/mriqc’s past year of commit activity
    Python 284 Apache-2.0 128 73 (13 issues need help) 4 Updated Jun 20, 2024
  • nibabies Public

    fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI

    nipreps/nibabies’s past year of commit activity
    Python 19 Apache-2.0 9 30 9 Updated Jun 20, 2024
  • smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    nipreps/smriprep’s past year of commit activity
    Python 126 Apache-2.0 37 57 12 Updated Jun 18, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…