DeepBin

Improved Metagenome Binning using Transformers

If you use this code in your project, please cite the arXiv paper:

Shenker-Tauris N, Gehrig J. Improved Metagenomic Binning with Transformers. [preprint]. 2022 February. Available from: https://www.biorxiv.org/content/10.1101/2022.02.12.479459v1. doi: 10.1101/2022.02.12.479459.

Name		Name	Last commit message	Last commit date
Latest commit History 23 Commits
archive		archive
contig_samples		contig_samples
README.md		README.md
clusters_to_bins.ipynb		clusters_to_bins.ipynb
extract_contig_lengths.py		extract_contig_lengths.py
latent_space_viz.py		latent_space_viz.py
mlm_evaluate.py		mlm_evaluate.py
mlm_train.py		mlm_train.py
nsp_mlm_evaluate.py		nsp_mlm_evaluate.py
nsp_mlm_train.py		nsp_mlm_train.py
visualization.ipynb		visualization.ipynb

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