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NIBSC Bioinformatics

NIBSC Bioinfomatics Area

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  1. ampliconseq_qiime2 ampliconseq_qiime2 Public

    QIIME2 Metagenomics Amplicon Sequencing Pipeline

    Shell 3

  2. core core Public

    General Purpose code for the activities of the Bioinformatics Core

    HTML 2 2

  3. VariantViz VariantViz Public

    Collection of interoperable tools to create different visualisations of genetic variants in different organisms

    R 1

  4. nanoprofiler nanoprofiler Public

    Profiling Nanobodies sequencing libraries

    HTML 1 1

  5. scoop scoop Public

    Another metagenomics pipeline with a cookery name. The pipeline is based on read classification (i.e. no assembly) and uses biobakery tools.

    Nextflow 1 1

  6. scranger scranger Public

    scRNAseq Pipeline running Cell Ranger and Seurat

    Nextflow 1 2

Repositories

Showing 10 of 28 repositories
  • microbiomeMQC Public

    Minimum Quality control for Microbiome data

    nibscbioinformatics/microbiomeMQC’s past year of commit activity
    R 1 0 0 0 Updated Apr 25, 2024
  • GCP-test Public
    nibscbioinformatics/GCP-test’s past year of commit activity
    1 0 0 0 Updated May 16, 2023
  • viralevo Public
    nibscbioinformatics/viralevo’s past year of commit activity
    Nextflow 1 MIT 2 4 0 Updated Sep 2, 2022
  • gcp-wiki Public Forked from MGordon09/gcp-wiki

    Repo for NIBSC GCP wiki

    nibscbioinformatics/gcp-wiki’s past year of commit activity
    0 1 0 0 Updated Sep 1, 2022
  • gcp-scripts Public Forked from MGordon09/gcp-scripts

    Scripts for HPC-GCP data transfer

    nibscbioinformatics/gcp-scripts’s past year of commit activity
    Shell 0 2 0 0 Updated Aug 22, 2022
  • gcp-env-scripts Public Forked from MGordon09/gcp-env-scripts

    bash scripts to create projects in GCP

    nibscbioinformatics/gcp-env-scripts’s past year of commit activity
    Shell 1 1 0 0 Updated Aug 19, 2022
  • testdata Public

    small dataset used to run nextflow pipelines tests

    nibscbioinformatics/testdata’s past year of commit activity
    0 4 0 0 Updated Aug 12, 2022
  • nibscbioinformatics/nf-core-buggybarcodes’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Nov 1, 2021
  • nf-core-bagobugs Public

    Nextflow DSL2 Pipeline for Shotgun Metagenomics Analysis

    nibscbioinformatics/nf-core-bagobugs’s past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Oct 12, 2021
  • nf-core-viralevo Public

    Bioinformatics analysis pipeline used to perform low-frequency variant calling for viral samples

    nibscbioinformatics/nf-core-viralevo’s past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Oct 8, 2021

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