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Have checks that if sub-parameter activate but main parameter not, error or give warning
enhancement
Improvement for existing functionality
#513
opened Aug 8, 2024 by
jfy133
Taxpasta parameters produce an error exit status of 2 during standardise part
bug
Something isn't working
#509
opened Jul 18, 2024 by
AndreaQ7
Add support for metacache
enhancement
Improvement for existing functionality
#506
opened Jul 5, 2024 by
ChillarAnand
Add CAT/BAT/RAT for long reads
enhancement
Improvement for existing functionality
#504
opened Jun 24, 2024 by
LilyAnderssonLee
Add a long read classifier: lemur
enhancement
Improvement for existing functionality
#503
opened Jun 24, 2024 by
LilyAnderssonLee
Add support for the sylph profiler
enhancement
Improvement for existing functionality
#497
opened Jun 14, 2024 by
Midnighter
Merged tables not produced if not run with --run_profile_standardisation
enhancement
Improvement for existing functionality
#494
opened Jun 11, 2024 by
apalleja
Add support Metabuli.
enhancement
Improvement for existing functionality
#492
opened May 31, 2024 by
Joon-Klaps
Generate samplesheet for nf-core/mag
enhancement
Improvement for existing functionality
#449
opened Feb 15, 2024 by
CarsonJM
Allow multiple bracken profiles with different Improvement for existing functionality
-l
levels from the same kraken2 report
enhancement
Profiling: consider cross-database merge for KMCP
enhancement
Improvement for existing functionality
Ideas: more post-processing functionality
enhancement
Improvement for existing functionality
question
Further information is requested
#335
opened Jul 24, 2023 by
jfy133
Consider switching host removal to graph based reference
enhancement
Improvement for existing functionality
#297
opened May 22, 2023 by
jfy133
Taxpasta only accepts a single taxonomy although multiple could be present in database samplesheet
bug
Something isn't working
enhancement
Improvement for existing functionality
Implement kaiju-mergeOutputs
enhancement
Improvement for existing functionality
help wanted
Extra attention is needed
question
Further information is requested
#288
opened Apr 26, 2023 by
artur-matysik
Provide functionality to create nf-core/mag samplesheet from final reads
enhancement
Improvement for existing functionality
Split up MultiQC run reports between long and short reads
enhancement
Improvement for existing functionality
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