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Pull requests list

WIP: Adding stubs everywhere
#1334 by maxulysse was merged Jul 3, 2024 Loading… updated Jul 3, 2024
11 tasks
2
add stub for local modules
#1331 by maxulysse was merged Jul 2, 2024 Loading… updated Jul 2, 2024
11 tasks
3
Update all nf-core/modules and subworkflows
#1330 by drpatelh was merged Jun 28, 2024 Loading… updated Jun 28, 2024
11 tasks
3
Update actions/checkout to v4
#1323 by adamrtalbot was merged Jun 19, 2024 Loading… updated Jun 21, 2024
1
Add nf-test for STAR-RSEM and HISAT2 aligners
#1328 by adamrtalbot was merged Jun 20, 2024 Loading… updated Jun 20, 2024
3 of 11 tasks
5
Remove tags from all nf-test files
#1329 by drpatelh was merged Jun 20, 2024 Loading… updated Jun 20, 2024
1
Fix tags entries and rename pipeline level tests
#1324 by drpatelh was merged Jun 20, 2024 Loading… updated Jun 20, 2024
29
Minor fixes to strandedness settings and messaging
#1325 by pinin4fjords was merged Jun 20, 2024 Loading… updated Jun 20, 2024
11 tasks
3.15.0
3
Move Conda dependencies for local modules to individual environment file
#1326 by drpatelh was merged Jun 20, 2024 Loading… updated Jun 20, 2024
1
Overhaul strandedness detection / comparison
#1306 by pinin4fjords was merged Jun 19, 2024 Loading… updated Jun 19, 2024
11 tasks
3.15.0
1
19
Use Github Action to detect file changes instead of custom Python code
#1322 by adamrtalbot was merged Jun 19, 2024 Loading… updated Jun 19, 2024
2 of 11 tasks
7
Remove push and release triggers from CI
#1321 by adamrtalbot was merged Jun 19, 2024 Loading… updated Jun 19, 2024
11 tasks
1
change gff re to include gff3 awaiting-response-community
#1191 by roldanjg was closed Jun 19, 2024 • Draft updated Jun 19, 2024
6 tasks done
10
Clarify infer strandedness step in subway map and text
#1307 by maxulysse was merged Jun 18, 2024 Loading… updated Jun 18, 2024
11 tasks
3.15.0
1
1
Fix issues with unzipping of GTF/ GFF files without absolute paths
#1312 by pinin4fjords was merged Jun 18, 2024 Loading… updated Jun 18, 2024
11 tasks
3.15.0
6
Document FASTP sampling
#1309 by pinin4fjords was merged Jun 18, 2024 Loading… updated Jun 18, 2024
11 tasks
3.15.0
1
4
Reinstate pseudoalignment subworkflow config
#1310 by pinin4fjords was merged Jun 18, 2024 Loading… updated Jun 18, 2024
11 tasks
3.15.0
2
Reinstate oncomplete error messages
#1319 by pinin4fjords was merged Jun 17, 2024 Loading… updated Jun 17, 2024
11 tasks
2
Strip problematic ifEmpty()
#1317 by pinin4fjords was merged Jun 12, 2024 Loading… updated Jun 12, 2024
11 tasks
1
Important! Template update for nf-core/tools v2.14.1
#1297 by nf-core-bot was merged May 13, 2024 Loading… updated May 29, 2024 3.15.0
10
Add missing files from Tximport processing
#1302 by pinin4fjords was merged May 16, 2024 Loading… updated May 29, 2024
11 tasks
1
3
Important! Template update for nf-core/tools v2.13
#1218 by nf-core-bot was merged Feb 21, 2024 Loading… updated May 29, 2024
1
Use pseudoalignment subworkflow components from nf-core/modules
#1210 by pinin4fjords was merged Feb 15, 2024 Loading… updated May 29, 2024
11 tasks
7
Important! Template update for nf-core/tools v2.13.1
#1229 by nf-core-bot was merged Mar 1, 2024 Loading… updated May 29, 2024
3
Important! Template update for nf-core/tools v2.14.0
#1296 by nf-core-bot was closed May 9, 2024 Loading… updated May 29, 2024
1
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