nf-core · bentsherman · Dec 13, 2023
diff --git a/modules/local/gtf_filter/main.nf b/modules/local/gtf_filter/main.nf
@@ -29,4 +29,10 @@ process GTF_FILTER {
  python: \$(python --version | sed 's/Python //g')
  END_VERSIONS
  """
+
+ stub:
+ """
+ touch 1.filtered.gtf
+ touch versions.yml
+ """
 }
diff --git a/modules/local/multiqc/main.nf b/modules/local/multiqc/main.nf
@@ -71,4 +71,11 @@ process MULTIQC {
  multiqc: \$( multiqc --version | sed -e "s/multiqc, version //g" )
  END_VERSIONS
  """
+
+ stub:
+ """
+ touch 1_multiqc_report.html
+ mkdir 1_data
+ mkdir versions.yml
+ """
 }
diff --git a/modules/nf-core/bbmap/bbsplit/main.nf b/modules/nf-core/bbmap/bbsplit/main.nf
diff --git a/modules/nf-core/custom/dumpsoftwareversions/main.nf b/modules/nf-core/custom/dumpsoftwareversions/main.nf
diff --git a/modules/nf-core/fq/subsample/main.nf b/modules/nf-core/fq/subsample/main.nf
diff --git a/modules/nf-core/salmon/quant/main.nf b/modules/nf-core/salmon/quant/main.nf
diff --git a/modules/nf-core/trimgalore/main.nf b/modules/nf-core/trimgalore/main.nf