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Pull requests: nf-core/modules

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Pull requests list

Add CI to build mulled containers with Wave
#4080 opened Oct 17, 2023 by edmundmiller Loading… Wave/Seqera Containers Migration
1
@edmundmiller
62
Allow index format specification in samtools view
#4326 opened Nov 13, 2023 by CharlotteAnne Loading…
1 of 14 tasks
27
Add new module vgan/haplocart
#2782 opened Jan 26, 2023 by JoshuaDanielRubin Loading…
2 tasks
1
@aidaanva
57
Added delly/filter, changed delly/call - this time with up-to-date fork
#5384 opened Mar 25, 2024 by alexnater Loading…
11 of 13 tasks
1
29
Ciriquant WIP Work in progress
#2828 opened Feb 2, 2023 by BarryDigby Loading…
3 tasks
13
4451 add vcf2maf nf test nf-test
#4463 opened Nov 28, 2023 by stevekm Loading…
4 of 14 tasks
1
21
Wave with Docker and Spack
#4940 opened Feb 16, 2024 by edmundmiller • Draft Wave/Seqera Containers Migration
@edmundmiller
9
Renovate DRY
#5768 opened Jun 6, 2024 by edmundmiller Loading… Renovate Version Update Automation
@edmundmiller
8
Convert ultraplex to nf-test
#5706 opened May 28, 2024 by SPPearce • Draft
14
add_module_arriba_visualisation new module Adding a new module
#4192 opened Oct 23, 2023 by peterpru Loading…
14 tasks done
@peterpru
18
Added a draft for fasta_ltrretriever_lai new subworkflow Ready for Review
#4984 opened Feb 25, 2024 by GallVp Loading…
8 of 17 tasks
15
Add nf-test for fastq_trim_fastp_fastqc subworkflow
#3809 opened Sep 4, 2023 by adamrtalbot Loading…
12
New module: tiledbvcf WIP Work in progress
#2835 opened Feb 3, 2023 by atrigila • Draft
10 of 16 tasks
19
Conda lock files
#5827 opened Jun 18, 2024 by edmundmiller Loading… Wave/Seqera Containers Migration
2
@edmundmiller
24
build: Remove conda env name
#5802 opened Jun 12, 2024 by edmundmiller Loading… Wave/Seqera Containers Migration
2
@edmundmiller
7
Arity POC
#5915 opened Jul 3, 2024 by nvnieuwk • Draft
@nvnieuwk
10
New module: scsplit/count container-issue
#5349 opened Mar 20, 2024 by IreneRobles Loading…
11 of 14 tasks
1
@IreneRobles
9
Goalign cleanseqs new module Adding a new module stale Stale
#1785 opened Jun 16, 2022 by andersgs Loading…
10 of 11 tasks
1
20
chore(deps): pin dependencies
#5845 opened Jun 19, 2024 by renovate bot Loading…
2 tasks
4
added nf-tests for crisprcleanr/normalize module
#5740 opened Jun 3, 2024 by LeonHornich Loading…
11
Add skani round 2
#5539 opened Apr 29, 2024 by CarsonJM Loading…
17 tasks
8
Bump star version and port tests to nf-test
#5529 opened Apr 26, 2024 by matthdsm Loading…
17 tasks
20
create ASCAT nf tests and remove pytest Do not merge yet draft nf-test
#5314 opened Mar 20, 2024 by mauro-saporita Loading…
3 of 17 tasks
1
37
update hmtnote
#4903 opened Feb 13, 2024 by ramprasadn • Draft
14 tasks
5
remove docker.userEmulation from config files
#4626 opened Dec 18, 2023 by mirpedrol Loading…
5
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