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Make segemehl outputs more specific #5724

Merged
merged 4 commits into from
May 30, 2024
Merged

Make segemehl outputs more specific #5724

merged 4 commits into from
May 30, 2024

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nictru
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@nictru nictru commented May 30, 2024

Currently, the output files of this module are all provided as a single channel containing the output directory.
This makes selecting individual files for further analysis inconvenient.

This was not a problem before, as the only nf-core pipeline using this module (circrna) had a specific process for handling this. Recently, we switched to using the nf-core GAWK module, which makes it necessary to provide only the relevant file to the process.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • Follow the input/output options guidelines.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda

@nictru nictru marked this pull request as ready for review May 30, 2024 11:27
@nictru nictru requested a review from BarryDigby as a code owner May 30, 2024 11:27
@nictru nictru added this pull request to the merge queue May 30, 2024
Merged via the queue into master with commit 9a6b074 May 30, 2024
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2 participants