Leviosam2 index #5316
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Leviosam2 index #5316
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added 2 commits
March 20, 2024 12:18
lgrochowalski
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jvfe
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Mar 20, 2024
* master: Added contrast limited adaptive histogram equalization module (nf-core#5268) Leviosam2 index (nf-core#5316) Add subworkflow mapAD (nf-core#5239) Remove AMRFinderPlus DB update on each invocation (nf-core#5232) Revert "add paths in output directive in cellranger cout module" (nf-core#5306) Revert "update kallistobustools count output list" (nf-core#5307) Igv reports (nf-core#5263) Remove unnecessary .view() in subworkflows/nf-core/vcf_phase_shapeit5 & tests/modules/nf-core/shapeit5/ligate/main.nf (nf-core#5280) Add wittyer as module (nf-core#5171) Bamstats (nf-core#4474) gatk4_asereadcounter add updated meta and nf-tests (nf-core#5164) 4557 new module kaijumergeoutputs + stub Kraken2/Kraken2 (nf-core#5249) add cram/index support to bwamem2 (nf-core#5248) Add README to modules build with Docker (nf-core#4935) update paths for VEP (nf-core#5281) nf-test bases2fastq (nf-core#5272) Add module seqfu/stats (nf-core#5275)
jvfe
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Mar 20, 2024
* master: Added contrast limited adaptive histogram equalization module (nf-core#5268) Leviosam2 index (nf-core#5316) Add subworkflow mapAD (nf-core#5239) Remove AMRFinderPlus DB update on each invocation (nf-core#5232) Revert "add paths in output directive in cellranger cout module" (nf-core#5306) Revert "update kallistobustools count output list" (nf-core#5307) Igv reports (nf-core#5263) Remove unnecessary .view() in subworkflows/nf-core/vcf_phase_shapeit5 & tests/modules/nf-core/shapeit5/ligate/main.nf (nf-core#5280) Add wittyer as module (nf-core#5171) Bamstats (nf-core#4474) gatk4_asereadcounter add updated meta and nf-tests (nf-core#5164) 4557 new module kaijumergeoutputs + stub Kraken2/Kraken2 (nf-core#5249) add cram/index support to bwamem2 (nf-core#5248) Add README to modules build with Docker (nf-core#4935) update paths for VEP (nf-core#5281) nf-test bases2fastq (nf-core#5272) Add module seqfu/stats (nf-core#5275) Added gt/gff3validator (nf-core#4718) Added liftoff (nf-core#5209)
tucano
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Mar 20, 2024
* first version * improvments * whitespaces * whitespaces * whitespaces * prettier --------- Co-authored-by: zxBIB Grochowalski,Lukasz (GCBDS) EXTERNAL <[email protected]>
jennylsmith
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Mar 20, 2024
* first version * improvments * whitespaces * whitespaces * whitespaces * prettier --------- Co-authored-by: zxBIB Grochowalski,Lukasz (GCBDS) EXTERNAL <[email protected]>
alexnater
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Mar 21, 2024
* first version * improvments * whitespaces * whitespaces * whitespaces * prettier --------- Co-authored-by: zxBIB Grochowalski,Lukasz (GCBDS) EXTERNAL <[email protected]>
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PR checklist
Closes partially #1582
In this PR I added the index command of liviosam2, there is also lift that should be added.