Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Adding intervals to sentieon driver cmd #4160

Merged
merged 4 commits into from
Oct 19, 2023
Merged

Conversation

asp8200
Copy link
Contributor

@asp8200 asp8200 commented Oct 18, 2023

Forgot to add the --intervals option for the sentieon-driver 🤦‍♂️

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

@asp8200 asp8200 marked this pull request as ready for review October 18, 2023 13:45
@maxulysse maxulysse added this pull request to the merge queue Oct 19, 2023
Merged via the queue into master with commit 30e3824 Oct 19, 2023
9 checks passed
@asp8200 asp8200 deleted the fix_sentieon_tnhaplotyper2 branch November 20, 2023 11:08
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
Status: Done
Development

Successfully merging this pull request may close these issues.

None yet

2 participants