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Update centrifuge/centrifuge #1495

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merged 11 commits into from
Apr 7, 2022
Merged

Update centrifuge/centrifuge #1495

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6fa03c8
Fix bug in centrifuge module
sofstam Apr 5, 2022
9ccb1e8
Add centrifuge/centrifuge
sofstam Apr 5, 2022
58d9557
Merge branch 'master' into update_centrifuge
sofstam Apr 5, 2022
42c44ae
Fix index for centrifuge db
sofstam Apr 6, 2022
4190ec8
Update modules/centrifuge/centrifuge/main.nf
sofstam Apr 7, 2022
c418ab8
Update tests/modules/centrifuge/centrifuge/main.nf
sofstam Apr 7, 2022
f8123bb
Merge branch 'master' into centrifuge_centrifuge
sofstam Apr 7, 2022
421a299
Update centrifuge_centrifuge
sofstam Apr 7, 2022
fa2231f
Update meta.yml
sofstam Apr 7, 2022
3f6d358
Update modules/centrifuge/centrifuge/meta.yml
sofstam Apr 7, 2022
181aafd
Update meta.yml
sofstam Apr 7, 2022
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Update tests/modules/centrifuge/centrifuge/main.nf 
Co-authored-by: James A. Fellows Yates <[email protected]>
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@sofstam @jfy133
sofstam and jfy133 committed Apr 7, 2022
commit c418ab891da82f9ce9b2b025a10951f7668aa1e3
1 change: 0 additions & 1 deletion tests/modules/centrifuge/centrifuge/main.nf
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Expand Up @@ -10,7 +10,6 @@ workflow test_centrifuge_centrifuge_single_end {
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
]
db = [ [], file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/minigut_cf.tar.gz', checkIfExists: true) ]
//db_name = "minigut_cf"
save_unaligned = true
save_aligned = false
sam_format = false
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