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Add when: block #1261

Merged
merged 1 commit into from
Feb 4, 2022
Merged

Add when: block #1261

merged 1 commit into from
Feb 4, 2022

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mahesh-panchal
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Add's when: block to all the modules to be in line with nf-core/tools#1393

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd
    • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd

maxulysse
maxulysse approved these changes Feb 4, 2022
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<3

@mahesh-panchal mahesh-panchal merged commit e20e57f into nf-core:master Feb 4, 2022
@mahesh-panchal mahesh-panchal deleted the add_when branch February 4, 2022 08:53
@JoseEspinosa JoseEspinosa mentioned this pull request Feb 4, 2022
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@grst grst mentioned this pull request Feb 9, 2022
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@drpatelh drpatelh mentioned this pull request Feb 9, 2022
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muffato added a commit to sanger-tol/nf-core-modules that referenced this pull request Feb 12, 2022
@muffato @drpatelh
Added the when: block, as per nf-core#1261
652440d 
Co-authored-by: Harshil Patel <[email protected]>
muffato added a commit to sanger-tol/nf-core-modules that referenced this pull request Feb 14, 2022
@muffato @drpatelh
Added the when: block, as per nf-core#1261
12fe437 
Co-authored-by: Harshil Patel <[email protected]>
drpatelh added a commit that referenced this pull request Feb 14, 2022
@muffato @drpatelh
First version of the biobambam/bammarkduplicates2 module (#1247)
04e82ec 
* First version of the biobambam/bammarkduplicates2 module

* Fixed the path of versions.yml

* Regenerated the checksums as the previous files were generated with a single core

* Added the `when:` block, as per #1261

Co-authored-by: Harshil Patel <[email protected]>

Co-authored-by: Harshil Patel <[email protected]>
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@maxulysse maxulysse maxulysse approved these changes

@JoseEspinosa JoseEspinosa Awaiting requested review from JoseEspinosa

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@mahesh-panchal @maxulysse