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Ci_test_branch_nf-core #119

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6a9c22b
Test assertion for model info
tillenglert Jun 26, 2024
f2ebd18
bugfix snapshot
tillenglert Jun 26, 2024
e5443c9
missed a comma
tillenglert Jun 26, 2024
66d3cce
nf-test assertions test_all
tillenglert Jun 26, 2024
fd5ee1d
spacing issue
tillenglert Jun 26, 2024
457ec76
test assertions test_assembly_only
tillenglert Jun 26, 2024
39939cc
missed some comma
tillenglert Jun 27, 2024
f58a981
more comma errors
tillenglert Jun 27, 2024
db50569
Remove changing md5sums
tillenglert Jun 27, 2024
4ef241a
sort alleles before assigning id
tillenglert Jun 27, 2024
434cc64
Update snapshots and files according to sorted alleles
tillenglert Jun 27, 2024
ff9add0
Assertions test_bins_only
tillenglert Jun 27, 2024
510a323
Assertions test_coassembly
tillenglert Jun 27, 2024
670934f
assertions test_mhcflurry
tillenglert Jun 27, 2024
e3e585c
Assertions mhcnuggets1
tillenglert Jun 27, 2024
4460fa2
Assertions test_mhcnuggets_2
tillenglert Jun 27, 2024
f04d6b2
Assertions test all pep lengths
tillenglert Jun 27, 2024
edb993f
Assertions test_mouse
tillenglert Jun 27, 2024
a6abbed
Assertions test_taxa
tillenglert Jun 27, 2024
fb89d62
Assertions test_specific_assembly
tillenglert Jun 27, 2024
9d66409
Assertions test
tillenglert Jun 28, 2024
fd1c066
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 1, 2024
33840bf
fix entrez tests
tillenglert Jul 1, 2024
8ec7f22
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 1, 2024
2d5d29d
Merge branch 'dev' into nf-test_assertions
tillenglert Jul 1, 2024
9c8b513
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 1, 2024
19d09ed
bugfix tests
tillenglert Jul 1, 2024
487de00
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 1, 2024
cfbb7b1
fix test_mouse copy/paste mistake
tillenglert Jul 1, 2024
dc829dd
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 1, 2024
bb3109b
remove double log in test_mouse
tillenglert Jul 1, 2024
7a5a791
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 1, 2024
c4a4692
fix test_mouse and test_all snapshot copy paste error
tillenglert Jul 1, 2024
27c7fec
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 1, 2024
f260736
test_mouse and test_all overlooked a comma
tillenglert Jul 1, 2024
cc35773
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 1, 2024
2fb6162
test if md5sum was just incorrect
tillenglert Jul 1, 2024
90e03a6
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 1, 2024
1399e61
Revert "test if md5sum was just incorrect"
tillenglert Jul 1, 2024
4641a59
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 1, 2024
9928067
fix sorting and gzip diffs between runs
tillenglert Jul 10, 2024
c05d655
Update all tests
tillenglert Jul 10, 2024
91e7642
Fix sorting and gzip diffs between runs
tillenglert Jul 10, 2024
36cbed9
Update nf-test profiles
tillenglert Jul 10, 2024
52effa3
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 10, 2024
c844024
Update snaps of standard tests
tillenglert Jul 10, 2024
c26f5cd
mouse_all_pep_lengths
tillenglert Jul 10, 2024
b4e75e4
Update snapshots for all tests
tillenglert Jul 10, 2024
0043121
fix incoming sorting of prediction merge
tillenglert Jul 10, 2024
db42476
Update nf-tests for syfpeithi predictions
tillenglert Jul 10, 2024
807b620
Update snapshots of syfpeithi prediction tests
tillenglert Jul 11, 2024
49fab0d
Update mhcflurry and mhcnuggets predictions
tillenglert Jul 11, 2024
e328b1c
Update snapshots for mhcflurry and mhcnuggets predictions
tillenglert Jul 11, 2024
7573f4a
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 11, 2024
8f0e2fd
Sort also entities
tillenglert Jul 11, 2024
e39f6d9
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 11, 2024
7d9dd6e
Update snaps after sorting commit
tillenglert Jul 11, 2024
999612c
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 11, 2024
128cf40
update test all
tillenglert Jul 11, 2024
a4f8dd6
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 11, 2024
980fb09
fix sorting of entities again and add entrez sorting
tillenglert Jul 11, 2024
11b2657
Update all tests again for new sorting
tillenglert Jul 11, 2024
c576196
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 11, 2024
ed1fd9b
Again better sorting as many duplicate numbers within one column
tillenglert Jul 11, 2024
4bf2d0e
Update test snapshots
tillenglert Jul 11, 2024
8e0bbce
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 11, 2024
926ea23
Added the same sorting for entrez downloads
tillenglert Jul 12, 2024
9698a5b
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 12, 2024
9652dd3
update snapshots of entrez tests
tillenglert Jul 12, 2024
be26b56
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 12, 2024
d7f9a01
fix sorting of entities (indent error and merging dfs)
tillenglert Jul 12, 2024
b728a5e
Update all snapshots
tillenglert Jul 12, 2024
ebbb4a8
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 12, 2024
2df3f62
fix generation of protein and entity ids and refactor script
tillenglert Jul 15, 2024
995d2cc
Update snapshots
tillenglert Jul 15, 2024
0b83bbc
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 15, 2024
c0b43ba
make nf-test verbose
tillenglert Jul 15, 2024
a440640
Update snapshots
tillenglert Jul 16, 2024
7750794
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 16, 2024
c5511ca
Update sorting of proetins/entities and new way of generating ids con…
tillenglert Jul 17, 2024
18e9021
fix multiplets of index
tillenglert Jul 17, 2024
935c075
Update snapshots
tillenglert Jul 17, 2024
0562869
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 17, 2024
b33ea0d
sort also peptides after generation (not full table)
tillenglert Jul 17, 2024
cc667d1
sort taxids in download proteins.log
tillenglert Jul 17, 2024
698a871
Update snapshots
tillenglert Jul 17, 2024
15eb6f1
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 17, 2024
c37d374
fix test mouse
tillenglert Jul 18, 2024
0cc30c8
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 18, 2024
97f58ba
Update sorting for peptides/proteins/entities
tillenglert Jul 18, 2024
336dbd1
fix index bug
tillenglert Jul 18, 2024
9062d9a
fi generate peptides script
tillenglert Jul 18, 2024
8236ea0
remove index from peptides.tsv.gz
tillenglert Jul 18, 2024
1dc4282
Update snapshots
tillenglert Jul 18, 2024
7deb923
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 18, 2024
b002195
update snapshots of failed tests
tillenglert Jul 18, 2024
2952d1a
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Jul 18, 2024
57fd30a
nf-test assertions
tillenglert Jul 18, 2024
5ffeb38
Add nf-test snapshots
tillenglert Jul 18, 2024
6818c98
Prior Commit to test
tillenglert Jul 25, 2024
dc0969a
testing branch commits
tillenglert Aug 5, 2024
3487024
Merge branch 'testing' into nf-test_assertions
tillenglert Aug 5, 2024
225e19e
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Aug 5, 2024
144591e
reset concat_tsv.py
tillenglert Aug 5, 2024
4f5a1c5
Merge branch 'nf-test_assertions' into ci_test_branch_nf-core
tillenglert Aug 5, 2024
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bugfix snapshot
  • Loading branch information
tillenglert committed Jun 26, 2024
commit f2ebd18c536052d7a33c276ebfc83aee1bb3ebd3
12 changes: 6 additions & 6 deletions tests/pipeline/test_model_information.nf.test.snap
Original file line number Diff line number Diff line change
Expand Up @@ -3,12 +3,12 @@
"content": [
"mhcflurry.v1.4.3.supported_alleles.txt:md5,1085d0010de0212a5d50d1639ccb8a0a",
"mhcflurry.v1.4.3.supported_lengths.txt:md5,5cff92e8752af1f00ee27f91f6ce6560",
"mhcnuggets-class-1.v2.3.2.supported_alleles.txt":"a322904c2327898c4a2e4b1824ef2efb",
"mhcnuggets-class-1.v2.3.2.supported_lengths.txt":"24ef44781f5012a27121050365845185",
"mhcnuggets-class-2.v2.3.2.supported_alleles.txt":"1f0230520650459480b5e41e280609d5",
"mhcnuggets-class-2.v2.3.2.supported_lengths.txt":"05340a7f5c43c23908f16ab5929b3481",
"syfpeithi.v1.0.supported_alleles.txt":"e007149d8f41dafc1290791c5f726194",
"syfpeithi.v1.0.supported_lengths.txt":"09d2bfbc74ac9aa5bb1a650f02b848df"
"mhcnuggets-class-1.v2.3.2.supported_alleles.txt:md5,a322904c2327898c4a2e4b1824ef2efb",
"mhcnuggets-class-1.v2.3.2.supported_lengths.txt:md5,24ef44781f5012a27121050365845185",
"mhcnuggets-class-2.v2.3.2.supported_alleles.txt:md5,1f0230520650459480b5e41e280609d5",
"mhcnuggets-class-2.v2.3.2.supported_lengths.txt:md5,05340a7f5c43c23908f16ab5929b3481",
"syfpeithi.v1.0.supported_alleles.txt:md5,e007149d8f41dafc1290791c5f726194",
"syfpeithi.v1.0.supported_lengths.txt:md5,09d2bfbc74ac9aa5bb1a650f02b848df"
],
"timestamp": "2024-06-26T08:14:54+0000"
}
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