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release 0.4.0 #370

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May 24, 2023
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release 0.4.0 #370

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b51a680
add 0.4.0 release notes
sampan501 May 24, 2023
2cfedd2
finish release notes
sampan501 May 24, 2023
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2 changes: 1 addition & 1 deletion docs/api/index.rst
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Expand Up @@ -72,7 +72,7 @@ Time-Series

MGCX
DcorrX

LjungBox


.. automodule:: hyppo.discrim
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1 change: 1 addition & 0 deletions docs/changelog/index.rst
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Expand Up @@ -6,6 +6,7 @@ This is the list of changes to hyppo between each release. For full details, see
.. toctree::
:maxdepth: 1

v0.4.0.md
v0.3.2.md
v0.3.1.md
v0.3.0.md
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17 changes: 0 additions & 17 deletions docs/changelog/v0.3.3.md
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107 changes: 105 additions & 2 deletions docs/changelog/v0.4.0.md
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@@ -1,10 +1,10 @@
# hyppo v0.3.0
# hyppo v0.4.0

> **Note:** hyppo v0.4.0 has not been released yet!

## Highlights of this release

hyppo v0.3.0 is the culmination of 12 months of hard work. It contains
hyppo v0.4.0 is the culmination of 12 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and better
documentation. All users are encouraged to
upgrade to this release, as there are a large number of bug-fixes and
Expand All @@ -14,14 +14,117 @@ This release requires Python 3.6+.

## New features

* Add Ljung-Box test
* Add fast chi-square approximation to KMERF
* Add null distribution to DiscrimOneSample
* Add Fast HHG 2-sample test
* Add KCI test
* Add FCIT test

## Bug fixes

* Fixed energy statistic computation
* Fix type checking for permutation groups

## Documentation

* Incorrect inference in the overview doc file
* Fixed documentation rendering issues
* Fixed typos in various docstrings
* Make clear statistic issues in FR test

## Maintenance

* Make Circle CI faster
* Removed numpy >1.25 because of numba issues
* Migrate Netlify from Xenial to Focal
* Refactor kgof module
* Temporarily skip two-sample discrinability tets

## Authors

<a href="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/sampan501">
<img src="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/sampan501.png" width="50">
</a>
<a href="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/j1c">
<img src="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/j1c.png" width="50">
</a>
<a href="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/transpersonify">
<img src="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/transpersonify.png" width="50">
</a>
<a href="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/saivythik">
<img src="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/saivythik.png" width="50">
</a>
<a href="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/victoris93">
<img src="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/victoris93.png" width="50">
</a>
<a href="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/prabhatkgupta">
<img src="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/prabhatkgupta.png" width="50">
</a>
<a href="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/harsh204016">
<img src="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/harsh204016.png" width="50">
</a>
<a href="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/oakla">
<img src="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/oakla.png" width="50">
</a>
<a href="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/TacticalFallacy">
<img src="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/TacticalFallacy.png" width="50">
</a>
<a href="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/zdbzdb123123">
<img src="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/zdbzdb123123.png" width="50">
</a>
<a href="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/MatthewZhao26">
<img src="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/MatthewZhao26.png" width="50">
</a>
<a href="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/darsh-patel">
<img src="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/darsh-patel.png" width="50">
</a>

## Issues Closed

* [#333](https://github.com/neurodata/hyppo/issues/333): FIX migrate Netlify image from Xenial to Focal
* [#330](https://github.com/neurodata/hyppo/issues/330): The statistic returned by the `test` method is different to the statistic returned by the `statistic` method
* [#328](https://github.com/neurodata/hyppo/issues/328): Two typos
* [#325](https://github.com/neurodata/hyppo/issues/325): Locator files?
* [#344](https://github.com/neurodata/hyppo/issues/344): [BUG] Possible issue with numba and numpy 1.24 compatibilitiy
* [#350](https://github.com/neurodata/hyppo/issues/350): Lots missing from API reference
* [#348](https://github.com/neurodata/hyppo/issues/348): jupyter notebooks are no longer rendering in docs
* [#359](https://github.com/neurodata/hyppo/issues/359): About Module 'hyppo.conditional'
* [#363](https://github.com/neurodata/hyppo/issues/363): Incorrect Inference in Overview of Workflow using MGC?
* [#341](https://github.com/neurodata/hyppo/issues/341): Energy statistic is wrong

## PRs Merged

* [#310](https://github.com/neurodata/hyppo/pull/310): run pytest in parallel
* [#321](https://github.com/neurodata/hyppo/pull/321): add skip decorator for two sample circleci tests
* [#319](https://github.com/neurodata/hyppo/pull/319): update sphinx to fix jinja error
* [#318](https://github.com/neurodata/hyppo/pull/318): Refactor kgof module
* [#315](https://github.com/neurodata/hyppo/pull/315): FCIT
* [#317](https://github.com/neurodata/hyppo/pull/317): KCI Dev Pull Request
* [#314](https://github.com/neurodata/hyppo/pull/314): Fast HHG 2-Sample Test
* [#327](https://github.com/neurodata/hyppo/pull/327): fix typos
* [#331](https://github.com/neurodata/hyppo/pull/331): Stat ranges to docs
* [#335](https://github.com/neurodata/hyppo/pull/335): DOC remove extra comma in dcorr docstring
* [#336](https://github.com/neurodata/hyppo/pull/336): make docs clear about FR corrected stat
* [#337](https://github.com/neurodata/hyppo/pull/337): fix two typos in docs
* [#340](https://github.com/neurodata/hyppo/pull/340): Fix typo in distance covariance equation
* [#345](https://github.com/neurodata/hyppo/pull/345): bugfix: reduce maximum dependency of numpy to 1.23.5
* [#346](https://github.com/neurodata/hyppo/pull/346): Add null distribution to DiscrimOneSampleTestOutput
* [#352](https://github.com/neurodata/hyppo/pull/352): v0.4.0
* [#351](https://github.com/neurodata/hyppo/pull/351): Bump ipython from 7.31.1 to 8.10.0 in /docs
* [#356](https://github.com/neurodata/hyppo/pull/356): Bump ipython from 7.31.1 to 8.10.0 in /docs
* [#357](https://github.com/neurodata/hyppo/pull/357): Fix type checking
* [#361](https://github.com/neurodata/hyppo/pull/361): Parameter noise for function _square_dimond
* [#364](https://github.com/neurodata/hyppo/pull/364): Fixes typo/ wrong inference in overview.py
* [#366](https://github.com/neurodata/hyppo/pull/366): Addition of Ljung-Box test and a simulation
* [#368](https://github.com/neurodata/hyppo/pull/368): fix energy statistic bug
* [#369](https://github.com/neurodata/hyppo/pull/369): Add Fast kmerf
* [#371](https://github.com/neurodata/hyppo/pull/371): docs: add transpersonify as a contributor for doc
* [#372](https://github.com/neurodata/hyppo/pull/372): docs: add saivythik as a contributor for doc, and bug
* [#373](https://github.com/neurodata/hyppo/pull/373): docs: add victoris93 as a contributor for code
* [#374](https://github.com/neurodata/hyppo/pull/374): docs: add j1c as a contributor for code
* [#375](https://github.com/neurodata/hyppo/pull/375): docs: add prabhatkgupta as a contributor for bug
* [#376](https://github.com/neurodata/hyppo/pull/376): docs: add harsh204016 as a contributor for doc
* [#377](https://github.com/neurodata/hyppo/pull/377): docs: add oakla as a contributor for doc
* [#378](https://github.com/neurodata/hyppo/pull/378): docs: add MatthewZhao26 as a contributor for code

2 changes: 1 addition & 1 deletion hyppo/__init__.py
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Expand Up @@ -7,4 +7,4 @@
import hyppo.d_variate
import hyppo.conditional

__version__ = "0.3.2"
__version__ = "0.4.0"
2 changes: 2 additions & 0 deletions setup.py
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Expand Up @@ -86,6 +86,8 @@ def run(self):
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
],
packages=find_packages(),
include_package_data=True,
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