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refactor package and add utilities documentation #156

Merged
merged 21 commits into from
Jan 12, 2021
Merged

refactor package and add utilities documentation #156

merged 21 commits into from
Jan 12, 2021

Commits on Jan 11, 2021

  1. add additional depth to docs

    @sampan501
    sampan501 committed Jan 11, 2021
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  2. add utils to a tools module

    @sampan501
    sampan501 committed Jan 11, 2021
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  3. add kernel and distance matrix docs

    @sampan501
    sampan501 committed Jan 11, 2021
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  4. rework weird if return with kwargs

    @sampan501
    sampan501 committed Jan 11, 2021
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  5. fix doctest assertion issues

    @sampan501
    sampan501 committed Jan 11, 2021
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  6. remove random_forest module and add kmerf to independence

    @sampan501
    sampan501 committed Jan 11, 2021
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  7. remove benchmarks folder (ref new repo)

    @sampan501
    sampan501 committed Jan 11, 2021
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  8. fix black formatting

    @sampan501
    sampan501 committed Jan 11, 2021
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  9. add ksample kmerf

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    sampan501 committed Jan 11, 2021
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  10. add kmerf docstrings

    @sampan501
    sampan501 committed Jan 11, 2021
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Commits on Jan 12, 2021

  1. add time series sim reference

    @sampan501
    sampan501 committed Jan 12, 2021
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  2. rename k-sample heading

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    sampan501 committed Jan 12, 2021
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  3. add time series reference

    @sampan501
    sampan501 committed Jan 12, 2021
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  4. speed up doctest times

    @sampan501
    sampan501 committed Jan 12, 2021
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  5. flake8 warning fixes

    @sampan501
    sampan501 committed Jan 12, 2021
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  6. simplify __all__ for modules

    @sampan501
    sampan501 committed Jan 12, 2021
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  7. simplify title ksample

    @sampan501
    sampan501 committed Jan 12, 2021
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  8. add permutation docstrings

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    sampan501 committed Jan 12, 2021
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  9. link to p-value computation methods

    @sampan501
    sampan501 committed Jan 12, 2021
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  10. add updates for ksample paper

    @sampan501
    sampan501 committed Jan 12, 2021
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  11. skip discrim doctests (slow)

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    sampan501 committed Jan 12, 2021
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