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Universitè de Bruxelles
- Belgium
- http:https://natevolution.com
- @Nat2bee
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Automatic DNA methylation detection from nanopore tools and their consensus model
Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
nanoporetech / Clair3
Forked from HKU-BAL/Clair3Clair3 - Integrating pileup and full-alignment for high-performance long-read variant calling
A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
Automatically exported from code.google.com/p/cdhit
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Data and scripts from the manuscript: Gene expression and epigenetics reveal species-specific mechanisms acting upon common molecular pathways in the evolution of task division in bees
Funding schemes and travel grant opportunities for postdocs
Python library to facilitate genome assembly, annotation, and comparative genomics
Automatic and optimised consensus clustering of one or more heterogeneous datasets
Building SuperTranscripts: A linear representation of transcriptome data
Phylogenetic orthology inference for comparative genomics
PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
Materials for short, half-day workshops
Software for clustering de novo assembled transcripts and counting overlapping reads