A multiple alignment viewer with integrated phylogeny and structure browsing.
For usage see the demo (source).
Basically something like this:
let mainDiv = document.getElementById ('main')
let opts = {
data: {
stockholm: /* can also use Fasta, Newick, or JSON */
"U5LNM4_9BETC/366-630 AELT-ECDLDVLFKN-DA...\n"
+ "SPIKE_CVHN5/322-526 PNLP-DCDIDNWLNNVSV...\n"
+ "SPIKE_CVHSA/317-569 PNITNLCPFGEVFNATKF...\n",
structure: {
"SPIKE_CVHSA/317-569": {
path: "pdb/5wrg.pdb",
startPos: 317,
chain: 'A'
}
}
},
config: {
parent: mainDiv
}
}
render (opts)