Stars
Reconstruction and analysis of viral and host genomes at multi-organ level
Nanomotif - a tool for identifying methylated motifs in metagenomic samples
A package for designing compact and comprehensive capture probe sets.
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
Cython bindings and Python interface to HMMER3.
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
geNomad: Identification of mobile genetic elements
Tool to plot synteny and structural rearrangements between genomes
🎄Visualization and annotation of phylogenetic trees
Build a map of genes present across a set of microbial genomes
Locate antiviral defence systems in prokaryotic genomes
Build a partitioned pangenome graph from microbial genomes
frame-shift correction for long-read (meta)genomics
Handy scripts for routine bioinformatic analysis
An open source, turn-based strategy game with a high fantasy theme.
🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads
Comparisons of multiple different prophage predictions
Bacterial Operon Finder for Functional Organization
Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
Optimizing and predicting performance of DNA methylation biomarkers using sequence methylation density information.
ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respec…