Lists (18)
Starred repositories
ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
python module to plot beautiful and highly customizable genome browser tracks
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
Python package built to ease deep learning on graph, on top of existing DL frameworks.
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
The Monod package fits CME models to sequencing data.
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.
Foldseek enables fast and sensitive comparisons of large structure sets.
PhyloAcc a software to detect the changes of conservation of a genomic region
Analysis of convergence between organismal traits and DNA/protein sequences
Phylogenetic maximum representation sampling: choosing most representative strains or taxa
An open access book on scientific visualization using python and matplotlib
CellRank: dynamics from multi-view single-cell data
Must-read papers on graph neural networks (GNN)
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Cutadapt removes adapter sequences from sequencing reads
An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
Phylogenetics toolkit for the PyData Ecosystem
🦀 Small exercises to get you used to reading and writing Rust code!
Make sankey, alluvial and sankey bump plots in ggplot
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
