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[Pruning] Test tutorial as is #123

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[Pruning] Test tutorial as is #123

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c85953c
add knitr to suggested to allow travis to test the tutorial
ShaiberAlon Sep 18, 2021
a779a7f
added tests/testthat/test_gGnome_tutorial.R
ShaiberAlon Sep 18, 2021
1bbcb34
added kableExtra magrittr and tidyr to required packages since those …
ShaiberAlon Sep 20, 2021
f22a38f
dont run qrp in tests since it errors out
ShaiberAlon Sep 20, 2021
fdd358e
commented out most of the proximity section of the tutorial since it …
ShaiberAlon Sep 21, 2021
7a54857
merged master into test_tutorial_as_is
ShaiberAlon Sep 21, 2021
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merged master into test_tutorial_as_is
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@ShaiberAlon
ShaiberAlon committed Sep 21, 2021
commit 7a5485705233e31526bdf4d61fa6d80a9a993a47
4 changes: 2 additions & 2 deletions tests/testthat/test_gGnome_event_callers.R
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Expand Up @@ -6,8 +6,8 @@ gg.jabba = gG(jabba = system.file('extdata/hcc1954', 'jabba.rds', package="gGnom

test_that('event caller', {
## run events caller with qrp
############# not running this currently since it is erroring out (See: https://app.travis-ci.com/github/mskilab/gGnome/builds/237955222 )
# gg.events = events(gg.jabba, run.qrp = TRUE)
# TODO: not running this currently since it is erroring out (See: https://app.travis-ci.com/github/mskilab/gGnome/builds/237955222 )
# gg.events = events(gg.jabba, QRP = TRUE)
# expect_is(gg.events$meta$events, 'data.table')
# expect_true(any(grepl('qrp', gg.events$meta$events$type)))

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