fixy for pgv

mskilab-org · Mar 7, 2022 · 741edda · 741edda
1 parent 85288eb
commit 741edda
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Showing 3 changed files with 27 additions and 2 deletions.
diff --git a/R/jsUtils.R b/R/jsUtils.R
@@ -77,7 +77,7 @@ pgv = function(data,
  cov.field.col = cov.field.col,
  cov.bin.width = cov.bin.width,
  cov.color.field = cov.color.field,
- dataset_name = dataset_name,
+ dataset_name = dname,
  ref = ref,
  overwrite = overwrite,
  annotation = annotation,
@@ -88,7 +88,7 @@ pgv = function(data,
  ncn.gr = ncn.gr,
  mc.cores = mc.cores))
  })
- return(rbindlist(out))
+ return(out)
 }
 
 #' @name gGnome.js

diff --git a/hg19.regularChr.chrom.sizes b/hg19.regularChr.chrom.sizes
@@ -0,0 +1,24 @@
+1 249250621
+2 243199373
+3 198022430
+4 191154276
+5 180915260
+6 171115067
+7 159138663
+8 146364022
+9 141213431
+10 135534747
+11 135006516
+12 133851895
+13 115169878
+14 107349540
+15 102531392
+16 90354753
+17 81195210
+18 78077248
+19 59128983
+20 63025520
+21 48129895
+22 51304566
+X 155270560
+Y 59373566
diff --git a/inst/extdata/jsUtils/phylogeny.newick b/inst/extdata/jsUtils/phylogeny.newick
@@ -0,0 +1 @@
+(s1,s2)0;