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Achievement: Pull SharkAchievement: YOLOAchievement: Arctic Code Vault Contributor
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  • WGS-mini-dataset Public

    mini dataset for WGS pipeline testing

    Jupyter Notebook MIT License Updated Jul 11, 2024

  • blog Public

    https://motroy.github.io/blog

    HTML MIT License Updated Mar 18, 2024

  • sandbox-202401 Public

    sandbox 202401

    Jupyter Notebook MIT License Updated Jan 11, 2024

  • sandbox-2024 Public

    sandbox 2024

    Jupyter Notebook MIT License Updated Jan 8, 2024

  • sandbox-2023 Public

    Jupyter Notebook MIT License Updated Sep 5, 2023

  • sandbox-2022 Public

    Jupyter Notebook MIT License Updated Jun 26, 2023

  • tourmaline Public

    Forked from aomlomics/tourmaline

    Amplicon sequence processing workflow using QIIME 2 and Snakemake

    Python BSD 3-Clause "New" or "Revised" License Updated Jun 1, 2023

  • snipit Public

    Forked from aineniamh/snipit

    snipit: summarise snps relative to your reference sequence

    Python GNU General Public License v3.0 Updated Sep 13, 2021

  • qiime2-rstudio-example Public

    Example use of qiime2 and rstudio for 16S gene microbiome analysis

    R MIT License Updated Apr 5, 2021

  • referenceseeker Public

    Forked from oschwengers/referenceseeker

    Rapid determination of appropriate reference genomes.

    Python GNU General Public License v3.0 Updated Jan 19, 2021

  • GrapeTree Public

    Forked from achtman-lab/GrapeTree

    GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/Gra…

    JavaScript GNU General Public License v3.0 Updated Nov 23, 2020

  • motroy.github.io Public

    https://motroy.github.io - website for sorting methods

    HTML Updated Aug 13, 2020

  • notebooks Public

    Forked from MAGICAL-github/notebooks

    Jupyter and R Notebooks

    Jupyter Notebook MIT License Updated Jul 28, 2020

  • bohra Public

    Forked from ropolomx/bohra

    A pipeline for bioinformatics analysis of bacterial genomes

    Python GNU General Public License v3.0 Updated Jun 11, 2020

  • online-cv Public

    Forked from sharu725/online-cv

    A minimal Jekyll Theme to host your resume (CV) from http:https://webjeda.com/online-cv/

    CSS MIT License Updated May 3, 2020

  • Managing_batch_effects Public

    Forked from EvaYiwenWang/Managing_batch_effects
    R Updated Jan 14, 2020

  • PlasmidCoverage Public

    Forked from tiagofilipe12/PlasmidCoverage

    Script to obtain plasmid id from WGS data using bowtie2 to map

    Python GNU General Public License v3.0 Updated Sep 8, 2018

  • drax Public

    Forked from will-rowe/drax

    A pipeline for Detecting Resistome Associated taXa

    Groovy MIT License Updated Jun 11, 2018

  • MIDAS Public

    Forked from snayfach/MIDAS

    An integrated pipeline for estimating strain-level genomic variation from metagenomic data

    Python GNU General Public License v3.0 Updated Feb 8, 2018