Change Log

New Functionality

• Added theme option (light[default] or dark)
• Added Fasta parser class
• Added load_example_fasta_dataset() utility function
• Added to_stack_features() helper function to avoid feature overlap

Bug Fix

• Fixed to ignore features that have no location (#54)

Change Log

Bug Fix

• Fixed a bug that the dependent libraries for HTML viewer were not packaged correctly

Change Log

New Functionality

• Added Features Table to HTML viewer experimentally (Demo Page)
• Added unit argument to gv.set_scale_xticks() to enable choose Gb, Mb, Kb, bp unit
• Added target_strand & target_range argument to gff.extract_exon_features()

Improvement

• Improved HTML viewer code & UI design
• Fixed to raise error in gv.savefig_html() for invalid figure
• Switched package manager poetry to rye

Change Log

Improvement

• Added reverse complement option to GUI

Bug Fix

• Fixed unexpected sys.exit when calling aligner tool

Major Upgrade v1.0.0

See README and document for details.

Change Log

Improvement

• Added track.add_features() method

Bug Fix

• Fixed a bug that caused an error in the GUI when uploaded files contain parentheses ().

Change Log

Bug Fix

• Fixed bug due to matplotlib v3.8.0 changes (#22)
• Fixed savefig() to suppress memory leak during multiple plots

Change Log

Improvement

• Added resource warning message for streamlit cloud deployment

Bug Fix

• Fixed gui run error when upload filename contains space char
• Fixed mmseqs run error when protein_id contains | char
• Fixed a bug that gff.get_seqid2size() got incorrect multi-contig size

v0.4.1...v0.4.2

Change Log

Improvement (GUI)

• Added genome comparison result download functionality
• Improved text contents & widget layout
• Adjusted range label padding size

Bug Fix

• Fixed feature coloring bug when facecolor tag is set

v0.4.0...v0.4.1

Change Log

New Functionality

• Added GUI (Web browser) functionality using streamlit (Demo Page)

Improvement

• Improved html viewer tooltip display content
• Changed linter flake8 to ruff

v0.3.2...v0.4.0