training

training/Dockerfile

@@ -10,14 +10,30 @@ USER root
 
 RUN rm -r /home/docker/runTimeScripts
 
+##################################
+# Geospatial
 #Get create_wrfinput.r
 RUN mkdir /home/docker/wrf-hydro-training
 RUN chmod -R 777 /home/docker/wrf-hydro-training
 COPY ./create_wrfinput.R /home/docker/wrf-hydro-training/wrf_hydro_model_tools/create_wrfinput.R
 
-#Get the entrypoint script to download the code release, start jupyter, etc
-COPY ./entrypoint.sh /.
-RUN chmod 777 /entrypoint.sh
+#Bring in NLDAS data
+RUN wget https://ral.ucar.edu/sites/default/files/public/ESMFregrid_NLDAS.tar_.gz \
+ && tar -xf ESMFregrid_NLDAS.tar_.gz \
+ && mv NLDAS /home/docker/wrf-hydro-training/regridding \
+ && rm ESMFregrid_NLDAS.tar_.gz
+
+#Get NLDAS forcing for regridding exercise
+COPY ./nldas_forcing.tar.gz /home/docker/wrf-hydro-training/regridding/data/nldas_forcing.tar.gz
+
+# install NCL
+RUN wget https://www.earthsystemgrid.org/dataset/ncl.640.dap/file/ncl_ncarg-6.4.0-Debian8.6_64bit_gnu492.tar.gz \
+ && mkdir /usr/local/ncl-6.4.0 \
+ && tar -xzf ncl_ncarg-6.4.0-Debian8.6_64bit_gnu492.tar.gz -C /usr/local/ncl-6.4.0 \
+ && rm ncl_ncarg-6.4.0-Debian8.6_64bit_gnu492.tar.gz
+
+ENV NCARG_ROOT=/usr/local/ncl-6.4.0
+ENV PATH=$NCARG_ROOT/bin:$PATH
 
 ############################
 ## Python
@@ -49,6 +65,11 @@ RUN wget http:https://cirrus.ucsd.edu/~pierce/ncdf/ncdf4_1.13.tar.gz \
 RUN Rscript -e 'install.packages(c("optparse"), repos="https://cran.rstudio.com")'
 
 ############################
+#Get the entrypoint script to download the code release, start jupyter, etc
+COPY ./entrypoint.sh /.
+RUN chmod 777 /entrypoint.sh
+
+RUN chmod -R 777 /home/docker/wrf-hydro-training/
 
 USER docker
 WORKDIR /home/docker

training/build.sh

@@ -1,5 +1,5 @@
 
 
-docker build "$@" -t wrfhydro/training:latest . 
+docker build "$@" -t wrfhydro/training:v5.0.0 . 
 
 exit $?

training/create_wrfinput.R

@@ -1,3 +1,5 @@
+#!/usr/bin/env Rscript
+
 ############################################################
 # R script to create wrfinput file from geogrid.
 # Usage: Rscript create_Wrfinput.R 
@@ -6,7 +8,6 @@
 # https://github.com/NCAR/hrldas-release/blob/release/HRLDAS/HRLDAS_forcing/lib/module_geo_em.F
 # from M. Barlage.
 ############################################################
-#!/usr/bin/env Rscript
 library(optparse)
 library(ncdf4)
 
@@ -15,13 +16,14 @@ option_list = list(
  help="Path to input geogrid file", metavar="character"),
  make_option(c("--outfile"), type="character", default="wrfinput_d01.nc", 
  help="output file name [default= %default]", metavar="character"),
- make_option(c("--filltyp"), type="integer", default=3, help="Soil type to use as a fill value in case conflicts between soil water and land cover water cells.
-If the script encounters a cell that is classified as land in the land use field (LU_INDEX) but is classified as a water soil type, it will replace the soil type with the value you
- specify below. Ideally there are not very many of these, so you can simply choose the most
- common soil type in your domain. Alternatively, you can set to a bad value (e.g., -8888)
- to see how many of these conflicts there are. If you do this DO NOT RUN THE MODEL WITH THESE
- BAD VALUES. Instead, fix them manually with a neighbor fill or similar fill algorithm.", 
- metavar="character"),
+ make_option(c("--filltyp"), type="integer", default=3, help="Soil type to use as a fill value in case 
+ conflicts between soil water and land cover water cells. If the script encounters a cell 
+ that is classified as land in the land use field (LU_INDEX) but is classified as a water 
+ soil type, it will replace the soil type with the value you specify. Ideally there are 
+ not very many of these, so you can simply choose the most common soil type in your domain. 
+ Alternatively, you can set to a bad value (e.g., -8888) to see how many of these conflicts 
+ there are. If you do this DO NOT RUN THE MODEL WITH THESE BAD VALUES. Instead, fix them 
+ manually with a neighbor fill or similar fill algorithm. [default= %default]", metavar="character"),
  make_option(c("--laimo"), type="integer", default=8, 
  help="output file name [default= %default]", metavar="character"),
  make_option(c("--missfloat"), type="numeric", default=(-1.e+36), 

training/entrypoint.sh

@@ -33,15 +33,17 @@ rm *testcase*.tar.gz
 mv /home/docker/example_case /home/docker/wrf-hydro-training/example_case
 echo "Retrieved the test case for release: $version"
 
-#echo
-#echo -e "\e[0;49;32m-----------------------------------\e[0m"
-#echo -e "\e[7;49;32mRetrieving WRF-Hydro model tools\e[0m"
+echo
+echo -e "\e[0;49;32m-----------------------------------\e[0m"
+echo -e "\e[7;49;32mRetrieving WRF-Hydro training\e[0m"
 
-#release=$(curl -s https://api.github.com/repos/NCAR/wrf_hydro_model_tools/releases/latest)
-#version=$(echo "$release" | grep "tag_name" | cut -d : -f 2,3 | tr -d \")
-#version=$(echo $version | tr "," " ")
-#git clone --branch $version https://github.com/NCAR/wrf_hydro_model_tools
-#mv /home/docker/wrf_hydro_model_tools /home/docker/wrf-hydro-training/wrf_hydro_model_tools
+release=$(curl -s https://api.github.com/repos/NCAR/wrf_hydro_model_tools/releases/latest)
+version=$(echo "$release" | grep "tag_name" | cut -d : -f 2,3 | tr -d \")
+version=$(echo $version | tr "," " ")
+#git clone --branch $version https://github.com/NCAR/wrf_hydro_training
+git clone https://github.com/NCAR/wrf_hydro_training
+mv /home/docker/wrf_hydro_training/lessons /home/docker/wrf-hydro-training/lessons
+rm -rf /home/docker/wrf_hydro_training/
 
 echo
 echo -e "\e[0;49;32m-----------------------------------\e[0m"
@@ -51,9 +53,9 @@ echo "Open your browser to the following address to access notebooks"
 echo -e "\033[33;5;7mlocalhost:8888\033[0m"
 echo
 echo -e "The password to login is:"
-echo -e "\033[33;5;7mnwmtraining\033[0m"
+echo -e "\033[33;5;7mwrfhydrotraining\033[0m"
 echo 
-echo "Type ctrl-C then y to shut down container." 
+echo "Press ctrl-C then type 'y' then press return to shut down container." 
 echo "NOTE ALL WORK WILL BE LOST UNLESS copied out of the container"
 
 jupyter notebook --ip 0.0.0.0 --no-browser &> /dev/null

training/jupyter_notebook_config.py

@@ -226,7 +226,8 @@
 # from notebook.auth import passwd; passwd()
 # 
 # The string should be of the form type:salt:hashed-password.
-c.NotebookApp.password = u'sha1:c4afd8e6cea6:3f096975b1040bd61db881a171834d092b3925df'
+c.NotebookApp.password = u'sha1:a06bfa1e94d2:5e84b748cebc4d1f32adaba98699a32f059f83ca'
+
 
 ## Forces users to use a password for the Notebook server. This is useful in a
 # multi user environment, for instance when everybody in the LAN can access each