Test data

mlmed · bganglia · Aug 3, 2020 · Aug 6, 2020 · Aug 6, 2020 · Aug 8, 2020
commit d2ae7c0d3e0ef1cd3581a87d25a10cdc61b4f383
diff --git a/tests/NIH_test_data/folder/00000001_000.png b/tests/NIH_test_data/folder/00000001_000.png
diff --git a/tests/NIH_test_data/folder/00000002_000.png b/tests/NIH_test_data/folder/00000002_000.png
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diff --git a/tests/NIH_test_data/folder/00000008_000.png b/tests/NIH_test_data/folder/00000008_000.png
diff --git a/tests/NIH_test_data/folder/00000009_000.png b/tests/NIH_test_data/folder/00000009_000.png
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diff --git a/tests/NIH_test_data/folder/00000011_000.png b/tests/NIH_test_data/folder/00000011_000.png
diff --git a/tests/NIH_test_data/tar.tar b/tests/NIH_test_data/tar.tar
diff --git a/tests/NIH_test_data/zip.zip b/tests/NIH_test_data/zip.zip
diff --git a/tests/PC_test_data/folder/117677712752528732526839762067921423608_ag14ef.png b/tests/PC_test_data/folder/117677712752528732526839762067921423608_ag14ef.png
diff --git a/tests/PC_test_data/folder/125374151943505747025890313053997514922_j5rk5q.png b/tests/PC_test_data/folder/125374151943505747025890313053997514922_j5rk5q.png
diff --git a/tests/PC_test_data/folder/12986792586879524468475227325378905558_f8k8bq.png b/tests/PC_test_data/folder/12986792586879524468475227325378905558_f8k8bq.png
diff --git a/...C_test_data/folder/216840111366964013076187734852011294130558067_00-193-087.png b/...C_test_data/folder/216840111366964013076187734852011294130558067_00-193-087.png
diff --git a/...C_test_data/folder/216840111366964013199786354762011304090209759_01-001-141.png b/...C_test_data/folder/216840111366964013199786354762011304090209759_01-001-141.png
diff --git a/...C_test_data/folder/216840111366964013534861372972012353112932019_01-129-187.png b/...C_test_data/folder/216840111366964013534861372972012353112932019_01-129-187.png
diff --git a/...C_test_data/folder/216840111366964013663026955732013130130708697_02-042-053.png b/...C_test_data/folder/216840111366964013663026955732013130130708697_02-042-053.png
diff --git a/tests/PC_test_data/folder/300276821619038978339766780609910437168_fgj94z.png b/tests/PC_test_data/folder/300276821619038978339766780609910437168_fgj94z.png
diff --git a/tests/PC_test_data/folder/318099584815157573909341904878106290504_erj1pn.png b/tests/PC_test_data/folder/318099584815157573909341904878106290504_erj1pn.png
diff --git a/tests/PC_test_data/folder/336326204749794028912525116839151974960_vsaz23.png b/tests/PC_test_data/folder/336326204749794028912525116839151974960_vsaz23.png
diff --git a/tests/PC_test_data/tar.tar b/tests/PC_test_data/tar.tar
diff --git a/tests/PC_test_data/zip.zip b/tests/PC_test_data/zip.zip
diff --git a/tests/gen_mimic/images-224.tar b/tests/gen_mimic/images-224.tar
diff --git a/tests/gen_mimic/images-224.zip b/tests/gen_mimic/images-224.zip
diff --git a/...2/9160eb4a-257a3140-8f138287-8981fc11.jpg → ...6/9622b5f2-3a3e307e-f5ca9164-375a6f70.jpg b/...2/9160eb4a-257a3140-8f138287-8981fc11.jpg → ...6/9622b5f2-3a3e307e-f5ca9164-375a6f70.jpg
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diff --git a/...a/b2d07eff-cd883d7d-3a00fd7a-e227a420.jpg → ...d/67dc7d13-32da76c2-ff22a175-5d4c3ced.jpg b/...a/b2d07eff-cd883d7d-3a00fd7a-e227a420.jpg → ...d/67dc7d13-32da76c2-ff22a175-5d4c3ced.jpg
diff --git a/...0/00e45f48-7a73e69b-1cbe72d4-7259c959.jpg → ...8/baf27490-fe6678a0-fe0b7379-665d78ba.jpg b/...0/00e45f48-7a73e69b-1cbe72d4-7259c959.jpg → ...8/baf27490-fe6678a0-fe0b7379-665d78ba.jpg
diff --git a/...mages-224/files/p63/p636c6ae0/sc8cca22c/da54bf19-4bfcbe16-b364a677-b61c0743.jpg b/...mages-224/files/p63/p636c6ae0/sc8cca22c/da54bf19-4bfcbe16-b364a677-b61c0743.jpg
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diff --git a/...0/c94bbfae-e39038df-5b7efb8e-31f9ee55.jpg → ...9/6a301286-456d8528-c59bd118-195ce98c.jpg b/...0/c94bbfae-e39038df-5b7efb8e-31f9ee55.jpg → ...9/6a301286-456d8528-c59bd118-195ce98c.jpg
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diff --git a/...mages-224/files/pf9/pf9374095/s0594dc84/e8aa3601-35458231-e6aa878c-7386bd70.jpg b/...mages-224/files/pf9/pf9374095/s0594dc84/e8aa3601-35458231-e6aa878c-7386bd70.jpg
diff --git a/tests/gen_mimic/mimic-cxr-2.0.0-metadata.csv b/tests/gen_mimic/mimic-cxr-2.0.0-metadata.csv
@@ -1,11 +1,11 @@
 dicom_id,subject_id,study_id,PerformedProcedureStepDescription,ViewPosition,Rows,Columns,StudyDate,StudyTime,ProcedureCodeSequence_CodeMeaning,ViewCodeSequence_CodeMeaning,PatientOrientationCodeSequence_CodeMeaning
-c5402f0b-2ecf6365-bd88b424-252ad568,085cff35,a433a81c,CHEST (PA AND LAT),PA,224,224,0,0,CHEST (PA AND LAT),postero-anterior,Recumbent
-63036743-d14a06a9-2784f480-257e30e1,edc6b925,d03e6b53,CHEST (PA AND LAT),PA,224,224,0,0,CHEST (PA AND LAT),postero-anterior,Recumbent
-9160eb4a-257a3140-8f138287-8981fc11,0639398e,ab8e71f2,CHEST (PA AND LAT),LATERAL,224,224,0,0,CHEST (PA AND LAT),lateral,Recumbent
-746857e8-930e2b92-830ba925-90a97e7e,67111dd3,97d40f2a,CHEST (PA AND LAT),PA,224,224,0,0,CHEST (PA AND LAT),postero-anterior,Recumbent
-1d5cc6d7-8c6bc168-7b694c53-4df47582,182aeefb,5239d871,CHEST (PA AND LAT),LATERAL,224,224,0,0,CHEST (PA AND LAT),lateral,Recumbent
-7d4c4448-a12969b6-e4f1fce9-e42b5a6c,88530ff8,732de0c4,CHEST (PA AND LAT),LATERAL,224,224,0,0,CHEST (PA AND LAT),lateral,Erect
-c94bbfae-e39038df-5b7efb8e-31f9ee55,32b572e6,9ba81d90,CHEST (PA AND LAT),LATERAL,224,224,0,0,CHEST (PA AND LAT),lateral,Erect
-da54bf19-4bfcbe16-b364a677-b61c0743,636c6ae0,c8cca22c,CHEST (PA AND LAT),LATERAL,224,224,0,0,CHEST (PA AND LAT),lateral,Erect
-d8d6c36e-f6d5be79-6d8d0627-4d147195,709a3d20,04003d64,CHEST (PA AND LAT),PA,224,224,0,0,CHEST (PA AND LAT),postero-anterior,Erect
-1c9bdf33-12762299-6e5a617d-b2b0ef88,700bf17d,da301b01,CHEST (PA AND LAT),PA,224,224,0,0,CHEST (PA AND LAT),postero-anterior,Recumbent
+dc7a8b5e-4ad1afd8-8f994433-643c39f8,346b3f01,14b48a44,CHEST (PA AND LAT),LATERAL,224,224,0,0,CHEST (PA AND LAT),lateral,Recumbent
+9622b5f2-3a3e307e-f5ca9164-375a6f70,11a8f57f,bf2ecf26,CHEST (PA AND LAT),PA,224,224,0,0,CHEST (PA AND LAT),postero-anterior,Erect
+8cf7e7b2-46bdc39f-31564b20-71ee6b6d,4eedf9fe,f8521632,CHEST (PA AND LAT),PA,224,224,0,0,CHEST (PA AND LAT),postero-anterior,Erect
+6a301286-456d8528-c59bd118-195ce98c,bc0ee611,89cfed09,CHEST (PA AND LAT),LATERAL,224,224,0,0,CHEST (PA AND LAT),lateral,Erect
+67dc7d13-32da76c2-ff22a175-5d4c3ced,54e08d2a,1c41417d,CHEST (PA AND LAT),PA,224,224,0,0,CHEST (PA AND LAT),postero-anterior,Erect
+b69fd4aa-55745241-f15af2bb-b979004a,3b3b7d36,f076c36f,CHEST (PA AND LAT),PA,224,224,0,0,CHEST (PA AND LAT),postero-anterior,Erect
+7e393cbe-6eac27c9-469708b4-dc5f22ef,310345ea,274bcf57,CHEST (PA AND LAT),LATERAL,224,224,0,0,CHEST (PA AND LAT),lateral,Erect
+a0082cb3-93689ac6-4fbbad4e-ddd68866,bfb2d1b6,2c5d98ee,CHEST (PA AND LAT),LATERAL,224,224,0,0,CHEST (PA AND LAT),lateral,Recumbent
+4197fbbc-1ed2f09e-8a82308b-971009a3,3d404d22,1e752e16,CHEST (PA AND LAT),LATERAL,224,224,0,0,CHEST (PA AND LAT),lateral,Erect
+baf27490-fe6678a0-fe0b7379-665d78ba,6145fd64,7968e508,CHEST (PA AND LAT),PA,224,224,0,0,CHEST (PA AND LAT),postero-anterior,Recumbent
diff --git a/tests/gen_mimic/mimic-cxr-2.0.0-metadata.csv.gz b/tests/gen_mimic/mimic-cxr-2.0.0-metadata.csv.gz
diff --git a/tests/gen_mimic/mimic-cxr-2.0.0-negbio.csv b/tests/gen_mimic/mimic-cxr-2.0.0-negbio.csv
@@ -1,11 +1,11 @@
 subject_id,study_id,Atelectasis,Cardiomegaly,Consolidation,Edema,Enlarged Cardiomediastinum,Fracture,Lung Lesion,Lung Opacity,No Finding,Pleural Effusion,Pleural Other,Pneumonia,Pneumothorax,Support Devices
-085cff35,a433a81c,1.0,0.0,1.0,,,,,1.0,,0.0,0.0,0.0,,1.0
-edc6b925,d03e6b53,0.0,1.0,1.0,-1.0,,,-1.0,-1.0,0.0,-1.0,1.0,0.0,0.0,-1.0
-0639398e,ab8e71f2,,1.0,,1.0,,1.0,,1.0,1.0,0.0,-1.0,1.0,-1.0,
-67111dd3,97d40f2a,0.0,0.0,0.0,,0.0,-1.0,1.0,1.0,-1.0,1.0,-1.0,0.0,0.0,0.0
-182aeefb,5239d871,1.0,,0.0,-1.0,0.0,1.0,,0.0,0.0,,,1.0,1.0,
-88530ff8,732de0c4,,1.0,-1.0,-1.0,1.0,-1.0,1.0,,1.0,1.0,0.0,-1.0,-1.0,1.0
-32b572e6,9ba81d90,,0.0,,,1.0,,,1.0,0.0,1.0,,-1.0,0.0,0.0
-636c6ae0,c8cca22c,1.0,-1.0,,-1.0,0.0,0.0,-1.0,-1.0,1.0,,,1.0,,-1.0
-709a3d20,04003d64,0.0,1.0,1.0,-1.0,,1.0,,0.0,-1.0,1.0,-1.0,0.0,,-1.0
-700bf17d,da301b01,0.0,0.0,1.0,-1.0,-1.0,,0.0,,-1.0,0.0,1.0,1.0,0.0,1.0
+346b3f01,14b48a44,-1.0,-1.0,0.0,0.0,-1.0,-1.0,,-1.0,0.0,,,,,
+11a8f57f,bf2ecf26,1.0,1.0,0.0,0.0,-1.0,0.0,-1.0,-1.0,0.0,1.0,1.0,-1.0,,1.0
+4eedf9fe,f8521632,,,1.0,0.0,1.0,1.0,,,,1.0,0.0,-1.0,-1.0,
+bc0ee611,89cfed09,0.0,,0.0,-1.0,-1.0,1.0,1.0,1.0,,0.0,-1.0,0.0,-1.0,0.0
+54e08d2a,1c41417d,1.0,-1.0,0.0,,,-1.0,-1.0,1.0,-1.0,-1.0,,,1.0,0.0
+3b3b7d36,f076c36f,,0.0,0.0,0.0,,1.0,0.0,0.0,0.0,-1.0,,,1.0,0.0
+310345ea,274bcf57,,0.0,0.0,-1.0,1.0,1.0,0.0,0.0,1.0,0.0,0.0,1.0,0.0,-1.0
+bfb2d1b6,2c5d98ee,-1.0,,,,,,1.0,,1.0,0.0,0.0,0.0,-1.0,-1.0
+3d404d22,1e752e16,0.0,0.0,1.0,-1.0,0.0,-1.0,1.0,1.0,0.0,-1.0,-1.0,1.0,-1.0,1.0
+6145fd64,7968e508,,-1.0,0.0,,-1.0,1.0,1.0,0.0,1.0,1.0,,1.0,,
diff --git a/tests/gen_mimic/mimic-cxr-2.0.0-negbio.csv.gz b/tests/gen_mimic/mimic-cxr-2.0.0-negbio.csv.gz