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Achievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

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  • ADAPT Public

    Analysis of Microbiome Differential Abundance by Pooling Tobit Models

    R 2 Other Updated May 18, 2024

  • ADAPT_example Public

    The source codes for the simulation studies and real data examples of ADAPT (Analysis of Microbiome Differential Abudance by Pooling Tobit Models).

    R Updated Apr 16, 2024

  • ENAR-DataFest Public

    DataFest 2024

    R Updated Feb 2, 2024

  • Bartlett-LRT Public

    C++ Updated Nov 12, 2023

  • ECCPaper1 Public

    Forked from blostein/ECCPaper1
    R Updated Aug 15, 2023

  • KVS-CoDa Public

    Forked from pjywang/KVS-CoDa

    Source code of the variable selection for compositional data paper (ICML 2023)

    Jupyter Notebook Updated Aug 11, 2023

  • LOCOM Public

    Forked from yijuanhu/LOCOM-Archive

    A logistic regression model for testing differential abundance in compositional microbiome data

    R Updated Jul 20, 2023

  • phegettrial Public

    Python Updated May 1, 2023

  • cardioStatsUSA Public

    Forked from jhs-hwg/cardioStatsUSA

    R Shiny application for exploring 20 years of blood pressure data from NHANES

    HTML GNU General Public License v3.0 Updated Mar 8, 2023

  • blockmodels Public

    Forked from cran/blockmodels

    ❗ This is a read-only mirror of the CRAN R package repository. blockmodels — Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm

    C++ Updated Jan 25, 2023

  • BIOSTAT830 Public

    Infectious Disease Modeling Fall 2022

    TeX Updated Dec 18, 2022

  • SIMPLI Public

    Forked from ciccalab/SIMPLI

    SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

    R Other Updated Aug 26, 2022

  • DTHC Public

    Diffusion Tree Hierarchical Clustering

    TeX Updated Jun 13, 2022

  • ANCOM-Code-Archive Public

    Forked from FrederickHuangLin/ANCOM-Code-Archive

    R functions for Analysis of Composition of Microbiomes (ANCOM).

    R MIT License Updated Jun 11, 2022

  • BIOSTAT882 Public

    TeX Updated Apr 20, 2022

  • SEGT Public

    Spatial Evolutionary Game Theory

    Python 1 1 Updated Apr 19, 2022

  • EvolutionInSilico_Current Public

    Forked from zamanlh/EvolutionInSilico_Current

    Winter 2021 Evolution in silico class!

    Jupyter Notebook Updated Mar 29, 2022

  • FingerpaintingFitnessLandscapes.js Public

    Forked from ZEEELab/FingerpaintingFitnessLandscapes.js

    Finger Painting Fitness Landscapes, but on the web

    JavaScript Updated Feb 28, 2022

  • pomp Public

    Forked from kingaa/pomp

    R package for statistical inference using partially observed Markov processes

    R GNU General Public License v3.0 Updated Feb 19, 2022

  • Comparison_of_DA_microbiome_methods Public

    Forked from nearinj/Comparison_of_DA_microbiome_methods
    R GNU General Public License v3.0 Updated Dec 9, 2021

  • EEB466 Public

    Code for homework of EEB466 at U of Michigan Fall 2021.

    R Updated Dec 8, 2021

  • BIOSTAT682-final-project Public

    This repository contains part of the code and training/test data that can illustrate how the Bayesian analysis was done for this project

    R Updated Dec 14, 2020

  • RobustEM Public

    Robust EM Algorithm for fitting Gaussian mixture distributions without disturbance from outliers.

    R 1 3 Other Updated Nov 17, 2020

  • CyTOF-process Public

    Automated Workflow for processing CyTOF data

    R Other Updated Nov 2, 2020

  • ANCOM-BC-Code-Archive Public

    Forked from FrederickHuangLin/ANCOM-BC-Code-Archive

    Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction"

    HTML MIT License Updated Oct 19, 2020

  • Rphenograph Public

    Forked from JinmiaoChenLab/Rphenograph

    Rphenograph: R implementation of the PhenoGraph algorithm

    R Updated Oct 4, 2020

  • varselect Public

    A package that carries out forward/backward variable selection for linear regression.

    C++ 1 Updated Sep 3, 2020

  • Vascular-eQTL Public

    Code Repository of eQTL Studies carried out under instructions of Dr. Santhi Ganesh and Dr. Xiang Zhou.

    R Updated Jul 5, 2020

  • STATCOM-SPH-Marketing Public

    Code Snippets for analyzing the survey results about the feedback to SPH websites.

    Updated Jul 5, 2020

  • scVI Public

    Forked from scverse/scvi-tools

    Deep generative modeling for single-cell omics data

    Python MIT License Updated Jun 12, 2020