Foldseek enables fast and sensitive comparisons of large structure sets.

A collection of functional and scientific icons for EMBL-EBI sites.

Making Protein folding accessible to all!

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

In-place Parallel Super Scalar Samplesort (IPS⁴o)

WebAssembly modules for genomics

x86 decoders for the yaxpeax project

Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment

Improved text rendering support for ggplot2

Instant Terminal Sharing

Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

Time command execution over multiple executions

Implementations of SIMD instruction sets for systems which don't natively support them.

SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

In-place Parallel Super Scalar Samplesort (IPS⁴o)

Conda recipes for the bioconda channel.

Fast function to parse strings into double (binary64) floating-point values, enforces the RFC 7159 (JSON standard) grammar: 4x faster than strtod

Code examples of fast and simple k-mer counters for tutorial purposes

🐙 A curated database of completed assemblies with taxonomy IDs

Detection of incorrectly labeled sequences across kingdoms

Convert GTDB taxonomy to NCBI taxdump format

Use tbl2asn forever by pretending that it's still 2019

MMseqs2: ultra fast and sensitive search and clustering suite

GenMap - Fast and Exact Computation of Genome Mappability

mimalloc is a compact general purpose allocator with excellent performance.

Move and resize windows on macOS with keyboard shortcuts and snap areas

🌈 Interactive analysis of metagenomics data

The dash shell as a linkable library. Tracks https://git.kernel.org/pub/scm/utils/dash/dash.git, with extended interfaces, bindings for Python and OCaml, and tools for generating JSON representatio…