Stars
Gathers machine learning and deep learning models for Stock forecasting including trading bots and simulations
cell detection in calcium imaging recordings
A research protocol for deep graph matching.
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnal…
EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.
Matlab routines for online non-rigid motion correction of calcium imaging data
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
Complete Matlab pipeline for large scale calcium imaging data analysis
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
A list of schools and researchers in computational neuroscience
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Control and design of two-photon photostimulation experiments
Calculate the transform required to map 2P imaging space onto SLM space
GUI to control holographic imaging/stimulation microscope
A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and disease"