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ENH: Switch recommonmark to MyST-parser #787

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Aug 18, 2022
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267d4e8
📝 Create basic for ML API
peterhessey Aug 5, 2022
806f261
📝 Add ML/configs base doc files
peterhessey Aug 5, 2022
0cbd7c7
📝 Finish ML/configs API
peterhessey Aug 8, 2022
f5c82cf
📝 Update augmentations
peterhessey Aug 8, 2022
ac0171a
📝 Add ML/dataset API docs
peterhessey Aug 8, 2022
e9fff6a
📝 Add rst skeleton for ML/models
peterhessey Aug 8, 2022
4fd8de4
📝 Fix docstring missing newlines
peterhessey Aug 8, 2022
6371548
Remove script
peterhessey Aug 8, 2022
27e7784
📝 Finish ML/models API docs
peterhessey Aug 8, 2022
6a1273f
📝 Start ML/SSL API. Fix some formatting issues
peterhessey Aug 9, 2022
562173b
📝 Correct whitespace issues in `:param`
peterhessey Aug 9, 2022
416e907
📝 Fix whitespace errors on `:return` statements
peterhessey Aug 9, 2022
a778dac
📝 Fix :return: statements
peterhessey Aug 9, 2022
33b557c
📝 Finish ML/SSL API
peterhessey Aug 9, 2022
7d4f466
📝 Add ML/utils API docs
peterhessey Aug 9, 2022
19ab5b2
📝 Add visualizer docs, fix `:raise` indents
peterhessey Aug 9, 2022
67169af
📝 Fix more issues with the `:raises:` formatting
peterhessey Aug 9, 2022
7619004
♻️ Restructuring folders
peterhessey Aug 9, 2022
bdc2a51
📝 Limit API `toctree` depth
peterhessey Aug 9, 2022
56c3a52
📝 Add primary InnerEye/ML files API to docs
peterhessey Aug 9, 2022
e9e5ee8
📝 Fix and add `InnerEye/ML/*.py` docs
peterhessey Aug 9, 2022
c1d84a8
⚰️ Remove weird `settings.json` change
peterhessey Aug 9, 2022
933bc7b
📌 Switch recommonmark to MyST-parser
peterhessey Aug 15, 2022
6e610b0
📌 Add myst-parser to `environment.yml`, lock env
peterhessey Aug 16, 2022
a9a5278
Fix conflicts merging main
peterhessey Aug 17, 2022
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📝 Create basic for ML API
  • Loading branch information
peterhessey committed Aug 5, 2022
commit 267d4e8455ab6de8852681a71aeebf614db16edd
3 changes: 2 additions & 1 deletion .vscode/settings.json
Original file line number Diff line number Diff line change
Expand Up @@ -12,5 +12,6 @@
},
"files.trimTrailingWhitespace": true,
"files.trimFinalNewlines": true,
"files.insertFinalNewline": true
"files.insertFinalNewline": true,
"esbonio.sphinx.confDir": ""
}
3 changes: 2 additions & 1 deletion docs/source/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -44,9 +44,10 @@
# ones.
extensions = [
'sphinx.ext.autodoc',
"sphinx.ext.autosummary",
'sphinx_rtd_theme',
'recommonmark',
'sphinx.ext.viewcode'
'sphinx.ext.viewcode',
]

# Add any paths that contain templates here, relative to this directory.
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36 changes: 0 additions & 36 deletions docs/source/rst/api/ML/configs.rst
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Expand Up @@ -3,41 +3,5 @@ Segmentation Model Configuration

.. autoclass:: InnerEye.ML.config.SegmentationModelBase

.. autoattribute:: activation_map_layers
.. autoattribute:: architecture
.. autoattribute:: loss_type
.. autoattribute:: mixture_loss_components
.. autoattribute:: loss_class_weight_power
.. autoattribute:: focal_loss_gamma
.. autoattribute:: dataset_expected_spacing_xyz
.. autoattribute:: feature_channels
.. autoattribute:: kernel_size
.. autoattribute:: crop_size
.. autoattribute:: image_channels
.. autoattribute:: ground_truth_ids
.. autoattribute:: mask_id
.. autoattribute:: norm_method
.. autoattribute:: window
.. autoattribute:: level
.. autoattribute:: output_range
.. autoattribute:: debug_mode
.. autoattribute:: tail
.. autoattribute:: sharpen
.. autoattribute:: trim_percentiles
.. autoattribute:: padding_mode
.. autoattribute:: inference_batch_size
.. autoattribute:: test_crop_size
.. autoattribute:: class_weights
.. autoattribute:: ensemble_aggregation_type
.. autoattribute:: posterior_smoothing_mm
.. autoattribute:: store_dataset_sample
.. autoattribute:: comparison_blob_storage_paths
.. autoattribute:: slice_exclusion_rules
.. autoattribute:: summed_probability_rules
.. autoattribute:: disable_extra_postprocessing
.. autoattribute:: ground_truth_ids_display_names
.. autoattribute:: col_type_converters
.. autoattribute:: is_plotting_enabled

.. automodule:: InnerEye.ML.config
:exclude-members: SegmentationModelBase
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