Support Multilabel classification models with png files #391

javier-alvarez · 2021-02-08T11:46:29Z

This PR adds support for multilabel classification models. Multiclass models (where labels are mutually exclusive) are not supported. Changes made:
- dataset.csv can include multiple labels per sample
- Loss functions changed to support multilabel classification tasks
- Extra report for multilabel classification tasks
Add support for png images

…om/microsoft/InnerEye-DeepLearning into jaalvare/multiclass_classification

…on' into jaalvare/multiclass_classification

ant0nsc

There is no documentation in the MD files about how to use a multi-class model. Similarly, there should be a description for multi-label case.
The metrics that we are presently computing make sense (I think) for multi-label, but not for multi-class with mutually exclusive labels.

InnerEye/ML/dataset/scalar_dataset.py

Tests/ML/reports/test_classification_report.py

InnerEye/ML/reports/classification_report.ipynb

InnerEye/ML/reports/classification_report.py

Tests/ML/models/test_scalar_model.py

…on' into jaalvare/multiclass_classification

InnerEye/ML/utils/supervised_criterion.py

InnerEye/ML/scalar_config.py

…om/microsoft/InnerEye-DeepLearning into jaalvare/multiclass_classification

javier-alvarez and others added 12 commits February 8, 2021 11:42

Add png

b89fc1e

Merge branch 'main' into jaalvare/multiclass_classification

a055389

Add num_classes

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Merge branch 'jaalvare/multiclass_classification' of https://github.c…

b3eafc5

…om/microsoft/InnerEye-DeepLearning into jaalvare/multiclass_classification

Add multiclass

aa01fb5

Merge branch 'main' into jaalvare/multiclass_classification

09e76c7

Merge branch 'main' into jaalvare/multiclass_classification

283ad5c

Add multiclass

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Fix report

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Merge remote-tracking branch 'origin/jaalvare/multiclass_classificati…

ef0de15

…on' into jaalvare/multiclass_classification

Undo change

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Fix types

5fdbe41

javier-alvarez changed the title ~~Add png~~ Support Multilabel classification models with png files Feb 10, 2021

javier-alvarez requested a review from Shruthi42 February 10, 2021 16:51

javier-alvarez and others added 7 commits February 10, 2021 17:17

Fix tests

ec569cc

Fix tests

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Fix tests

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Fix tests

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Fix import

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Fix types

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Merge branch 'main' into jaalvare/multiclass_classification

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javier-alvarez marked this pull request as ready for review February 11, 2021 13:58

ant0nsc suggested changes Feb 12, 2021

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javier-alvarez added 5 commits February 12, 2021 17:53

Add exclusive

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Merge remote-tracking branch 'origin/jaalvare/multiclass_classificati…

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…on' into jaalvare/multiclass_classification

Fix comments

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Support BCE weighting classes

cac5dc0

Fix tests

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Shruthi42 reviewed Feb 15, 2021

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InnerEye/ML/scalar_config.py Outdated Show resolved Hide resolved

Fix tests

c67eab8

Shruthi42 added 4 commits March 18, 2021 18:21

Address PR comments

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Address PR comments

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Address PR comments

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Address PR comments

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melanibe previously approved these changes Mar 18, 2021

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ant0nsc previously approved these changes Mar 18, 2021

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Fix test

51b4a6d

Shruthi42 dismissed stale reviews from ant0nsc and melanibe via 51b4a6d March 19, 2021 09:52

Shruthi42 and others added 2 commits March 19, 2021 15:27

Fix typo

90a29f7

Merge branch 'main' into jaalvare/multiclass_classification

d7cba74

ant0nsc previously approved these changes Mar 19, 2021

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Shruthi42 enabled auto-merge (squash) March 19, 2021 10:55

melanibe previously approved these changes Mar 19, 2021

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Shruthi42 added 2 commits March 19, 2021 18:46

Address PR comments

650c350

Merge branch 'jaalvare/multiclass_classification' of https://github.c…

5b040e7

…om/microsoft/InnerEye-DeepLearning into jaalvare/multiclass_classification

Shruthi42 dismissed stale reviews from melanibe and ant0nsc via 5b040e7 March 19, 2021 13:18

ant0nsc previously approved these changes Mar 19, 2021

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Fix random test failures

f0485f3

Shruthi42 dismissed ant0nsc’s stale review via f0485f3 March 19, 2021 14:05

ant0nsc previously approved these changes Mar 19, 2021

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Import pytest

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Shruthi42 dismissed ant0nsc’s stale review via 6855ca8 March 19, 2021 14:10

ant0nsc approved these changes Mar 19, 2021

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Shruthi42 mentioned this pull request Mar 19, 2021

Builds fail non-reproducibly with papermill timeout errors #419

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melanibe approved these changes Mar 19, 2021

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Shruthi42 merged commit 917f8d0 into main Mar 19, 2021

Shruthi42 deleted the jaalvare/multiclass_classification branch March 19, 2021 16:03

ant0nsc linked an issue Mar 19, 2021 that may be closed by this pull request

Builds fail non-reproducibly with papermill timeout errors #419

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Support Multilabel classification models with png files #391

Support Multilabel classification models with png files #391

javier-alvarez commented Feb 8, 2021 •

edited by Shruthi42

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Support Multilabel classification models with png files #391

Support Multilabel classification models with png files #391

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javier-alvarez commented Feb 8, 2021 •

edited by Shruthi42

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