Fix for AzureML environment problem (#587)

CHANGELOG.md

@@ -53,6 +53,7 @@ gets uploaded to AzureML, by skipping all test folders.
 - ([#572](https://github.com/microsoft/InnerEye-DeepLearning/pull/572)) Updated to new version of hi-ml package
 
 ### Fixed
+- ([#587](https://github.com/microsoft/InnerEye-DeepLearning/pull/587)) Bug fix for regression in AzureML's handling of environments: upgrade to hi-ml 0.1.11
 - ([#537](https://github.com/microsoft/InnerEye-DeepLearning/pull/537)) Print warning if inference is disabled but comparison requested.
 - ([#567](https://github.com/microsoft/InnerEye-DeepLearning/pull/567)) fix pillow version.
 - ([#546](https://github.com/microsoft/InnerEye-DeepLearning/pull/546)) Environment and hello_world_model documentation updated

Tests/Common/test_commandline_parsing.py

@@ -67,7 +67,8 @@ def test_create_ml_runner_args(is_container: bool,
  run=None,
  is_running_in_azure_ml=False,
  output_folder=Path.cwd(),
- logs_folder=Path.cwd())
+ logs_folder=Path.cwd(),
+ mount_contexts=[])
  runner.run_in_situ(azure_run_info)
  azure_config = runner.azure_config
  container_or_legacy_config = runner.lightning_container if is_container else runner.model_config

Tests/ML/test_download_upload.py

@@ -166,7 +166,8 @@ def _test_mount_for_lightning_container(test_output_dirs: OutputFolderForTests,
  run=None,
  is_running_in_azure_ml=False,
  output_folder=Path(),
- logs_folder=Path()
+ logs_folder=Path(),
+ mount_contexts=[]
  ))
  return runner.container
 

environment.yml

@@ -23,8 +23,8 @@ dependencies:
  - gitpython==3.1.7
  - gputil==1.4.0
  - h5py==2.10.0
- - hi-ml==0.1.10
- - hi-ml-azure==0.1.10
+ - hi-ml==0.1.11
+ - hi-ml-azure==0.1.11
  - InnerEye-DICOM-RT==1.0.1
  - joblib==0.16.0
  - jupyter==1.0.0