Add CPU tests market and GitHub action

.github/workflows/cpu_ci.yml

@@ -0,0 +1,34 @@
+name: "Run CPU Tests"
+
+on: "push"
+
+jobs:
+ run-tests:
+ runs-on: ubuntu-latest
+ steps:
+ - uses: actions/checkout@v3
+
+ - name: Install Python
+ uses: actions/setup-python@v4
+ with:
+ python-version: "3.9"
+
+ - name: Upgrade Pip
+ run: python -m pip install --upgrade pip
+
+ - name: Install Dependencies
+ run: |
+ pip install -e .[dev]
+
+ # - name: Install Dependencies
+ # run: |
+ # sudo apt-get install libopenmpi-dev -y
+ # pip install torch==1.8.2 torchvision==0.9.2 torchaudio==0.8.2 --extra-index-url https://download.pytorch.org/whl/lts/1.8/cpu
+ # pip install -r requirements/requirements.txt
+ # pip install -r requirements/requirements-dev.txt
+
+ # - name: Prepare Data
+ # run: python prepare_data.py
+
+ - name: Run CPU Tests
+ run: pytest tests -m cpu

elk/tests/extraction/test_gen_parser.py

@@ -1,6 +1,8 @@
+import pytest
 from elk.extraction.parser import get_extraction_parser
 
 
+@pytest.mark.cpu
 def test_args_no_underscores():
  """
  Assert that there are no underscores in the CLI parameter names. We wish

pyproject.toml

@@ -37,3 +37,6 @@ elk = "elk.__main__:run"
 
 [tool.setuptools]
 packages = ["elk"]
+
+[tool.pytest.ini_options]
+markers = ["cpu: Marker for tests that do not depend on GPUs"]