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Cincinnati Children's Hospital Medical Center
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workflows Public
Forked from datirium/workflowsBioWardrobe's CWL files
Common Workflow Language Apache License 2.0 UpdatedJul 29, 2024 -
toil Public
Forked from DataBiosphere/toilA scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
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souporcell Public
Forked from wheaton5/souporcellClustering scRNAseq by genotypes
Python MIT License UpdatedMay 1, 2024 -
satellite-cluster-api Public
Forked from datirium/satellite-cluster-apian API to replace airflow for cluster integration in satellites
Shell UpdatedDec 13, 2023 -
altanalyze3 Public
Forked from SalomonisLab/altanalyze3Python Apache License 2.0 UpdatedApr 7, 2023 -
mergebams Public
Forked from furlan-lab/mergebamsCommand line tool for merging single cell rna-sequencing bams with intelligent tag preservation
Rust MIT License UpdatedMar 16, 2023 -
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GSEApy Public
Forked from zqfang/GSEApyGene Set Enrichment Analysis in Python
Python MIT License UpdatedDec 21, 2022 -
morpheus.R Public
Forked from cmap/morpheus.RR interface to morpheus.js heatmap widget
R BSD 3-Clause "New" or "Revised" License UpdatedNov 4, 2022 -
bio-cwl-tools Public
Forked from common-workflow-library/bio-cwl-toolsCommon Workflow Language Apache License 2.0 UpdatedOct 7, 2022 -
scTriangulate Public
Forked from frankligy/scTriangulatescTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions
Python MIT License UpdatedAug 5, 2022 -
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GFPGAN Public
Forked from TencentARC/GFPGANGFPGAN aims at developing Practical Algorithms for Real-world Face Restoration.
Python Other UpdatedDec 16, 2021 -
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bamsplice Public
Forked from Barski-lab/geepINPUT: sam, bam, gff, gtf, tab-delimited table annotations
C++ MIT License UpdatedNov 11, 2021 -
schema_salad Public
Forked from common-workflow-language/schema_saladSemantic Annotations for Linked Avro Data
Python Apache License 2.0 UpdatedJun 22, 2021 -
janis-core Public
Forked from PMCC-BioinformaticsCore/janis-coreCore python modules for Janis Pipeline workflow assistant
Python GNU General Public License v3.0 UpdatedJun 2, 2021 -
cwl-patterns Public
Forked from common-workflow-library/cwl-patternsPatterns commonly encountered when writing CWL workflows
Common Workflow Language Apache License 2.0 UpdatedJun 1, 2021 -
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cwltool Public
Forked from common-workflow-language/cwltoolCommon Workflow Language reference implementation
Python Apache License 2.0 UpdatedMar 9, 2021 -
ToolJig Public
Forked from srp33/ToolJigToolJig: An app for building simplified Common Workflow Language tool descriptions
HTML UpdatedFeb 8, 2021 -
cellxgene_VIP Public
Forked from interactivereport/cellxgene_VIPEnables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also…
HTML MIT License UpdatedFeb 1, 2021 -
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cellxgene-gateway Public
Forked from Novartis/cellxgene-gatewayCellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Python Apache License 2.0 UpdatedJan 18, 2021 -
fuzzdb Public
Forked from fuzzdb-project/fuzzdbDictionary of attack patterns and primitives for black-box application fault injection and resource discovery.
PHP UpdatedDec 18, 2020 -
job-generator Public
Job generator for MiraldiLab workflows
Python Apache License 2.0 UpdatedOct 17, 2020 -
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MAnorm Public
Forked from shao-lab/MAnormA robust model for quantitative comparison of ChIP-Seq data sets.
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 28, 2020 -
kb_python Public
Forked from pachterlab/kb_pythonA wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
Python BSD 2-Clause "Simplified" License UpdatedSep 23, 2020 -
rapids-single-cell-examples Public
Forked from NVIDIA-Genomics-Research/rapids-single-cell-examplesExamples of single-cell genomic analysis accelerated with RAPIDS
Jupyter Notebook Apache License 2.0 UpdatedAug 6, 2020