tHMM
is a Python3 package for clustering, visualizing, and analyzing data in the form of lineage trees. This work is now published in Communications Biology https://www.nature.com/articles/s42003-022-04208-9
$ git clone https://github.com/meyer-lab/tHMM.git
It takes a few seconds to clone the repository.
This package is supported on macOS and Linux systems.
tHMM
requires virtualenv
. All other required packages can then be installed using make venv
to establish a virtual environment.
The Python packages that will be installed are listed in pyproject.toml, and can be directly installed using poetry install
.
Please find the documentation at https://thmm.readthedocs.io.
This project is covered under the MIT License.