G

GTDB version R220 not R200

formating

update docs

drop double check

Merge pull request #683 from metagenome-atlas/subset-vamb

Enable running cobinning on different bingroups

ci: use micromamba (#682)

* ci: use micromamba

* use different mamba container

default no gene annotations

Genome dereplication using skani (#663)

* add_skani

* add target_rule

* skani run

* added skani 2 parquet

* skani2 parquet tested

* species clustering with skani

* add info about translation table to cluter species

* rename genomes with skani

* drop dRep

* new bin report ugly

* formating

* use upercase names as in checkm2

* use upper case for quality headers

* fix upercase

* fix report

* formating

* remove drep option from config

* make pandas2 ready

* formatig

* make output of binning, genomes and genecatalog temp

* recalibrate quality

* formating

* move raw bin_finfo to subfolder

* path in raw bins

formating

Revert "limit pandas version in eggnog mapper #653"

This reverts commit c6c5d61.