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Issues: mehta-lab/microDL

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4 Open 75 Closed
4 Open 75 Closed
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Issues list

Training error without augmentation bug Something isn't working training training and evaluating the models
#215 by Soorya19Pradeep was closed Apr 21, 2023
@Christianfoley @ziw-liu
1 👀 1
Switch from keras to tf.keras
#59 by jennyfolkesson was closed Dec 8, 2022
1
train_scirpt.py doesn't create model dir if it doesn't exist
#21 by smguo was closed Sep 2, 2018
1
train_script.py doesn't output error when all GPUs are occupied
#22 by smguo was closed Aug 28, 2018
1
ModelCheckpoint monitor is train_loss in the config file template
#23 by smguo was closed Sep 10, 2018
1
Predicted images generated by Inference_script.py don't have the full dimension as the target images
#24 by smguo was closed Sep 13, 2018
1
ImageValidator doesn't accept images with file name format "image_n0_z0.npy"
#25 by smguo was closed Oct 26, 2018
1
Branch "Infer_on_large_image":"predict_on_larger_image" in model_inference.py only supports single channel input
#34 by smguo was closed Sep 13, 2018
4
Branch "Infer_on_large_image": shape mismatch errors when input image dimension is not power of 2
#37 by smguo was closed Feb 21, 2019
1
[master branch] "tile_image" generate tiles with different sizes when the input image dimension is not the multiple of input tile size
#41 by smguo was closed Oct 4, 2018
4
Docker image
#43 by jennyfolkesson was closed Feb 21, 2019
@jennyfolkesson
1
Remove run_image_preprocessing
#44 by jennyfolkesson was closed Oct 26, 2018
@jennyfolkesson
1
Add 3D data augmentations
#51 by jennyfolkesson was closed Dec 4, 2018
@jennyfolkesson
1
Dynamic importing of classes and logging help wanted Extra attention is needed
#9 by anithapk was closed Aug 23, 2022
Update inference_tiles to work with new data format
#60 by jennyfolkesson was closed Jun 6, 2019
1
Add config parameter checks docs enhancement New feature or request
#62 by jennyfolkesson was closed Jul 13, 2023 microDL 2.0.0
2
if metrics not provided, not handled in trainer. Pass random_seed to dataset and training_table
#66 by anithapk was closed Feb 6, 2019
find optimal # of z-slices for image translation (2.5D label-free -> 2D fluorescence) enhancement New feature or request
#67 by mattersoflight was closed Aug 3, 2019
@mattersoflight @jennyfolkesson @smguo
1
Option to add masks as input
#69 by jennyfolkesson was closed Feb 21, 2019
@jennyfolkesson
1
aux_utils.get_row_idx
#79 by anithapk was closed Aug 10, 2019
@jennyfolkesson
unify preprocessing CLI with lightning CLI
#231 by mattersoflight was closed Jul 13, 2023
@ziw-liu
1
Preprocessing is slow when overwriting existing dir
#101 by jennyfolkesson was closed Jun 6, 2019
@jennyfolkesson
1
Trainer.py doesn't use multiple workers for training when workers >1
#109 by smguo was closed Mar 19, 2022
1
merge data command
#119 by pranathivemuri was closed Jul 13, 2023 microDL 2.0.0
2
Add SSIM as an option for loss + metrics
#52 by jennyfolkesson was closed Feb 21, 2019
@jennyfolkesson
1
ProTip! Adding no:label will show everything without a label.