Download FASTQ files from SRA or ENA repositories.

Diagrams for visualizing neural network architecture (Created with diagrams.net)

Latex code for making neural networks diagrams

A generative model for programmable protein design

You like pytorch? You like micrograd? You love tinygrad! ❤️

A lightweight python-only library for reading and writing SMILES strings

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

A python package for visualization and analysis of high-throughput flow cytometry data

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

A Grammar of Graphics for Python

Python API for Genomic Data Commons

DEPRECATED: Store and query public TCGA data

Python client for the Egnyte Public API.

Deep Learning Method to Identify Cancer Associated TCRs

Mixture-of-Experts Variational Autoencoder for Clustering and Generating from Similarity-Based Representations on Single Cell Data

Quantifying spatial information in spatial transcriptomics

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.

Making Protein folding accessible to all!

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

In-silico doublet annotation for single cell RNA sequencing data

Power CLI and Workflow manager for LLMs (core package)