Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

bugfix 2.8.0 #978

Merged
merged 5 commits into from
Feb 14, 2024
Merged

bugfix 2.8.0 #978

merged 5 commits into from
Feb 14, 2024

Conversation

WardDeb
Copy link
Member

@WardDeb WardDeb commented Feb 6, 2024

multiqc and py 3.7 are not compatible anymore and needs a more recent python version. This is an attempt to (drastically) boost the shared_env versions. Currently still testing all the workflows for any hiccups

  • ncRNA
  • ATAC
  • ChIP
  • DNA
  • mRNA
  • mRNA - allelic
  • HiC
  • scRNA
  • WGBS

@WardDeb
Copy link
Member Author

WardDeb commented Feb 13, 2024

WGBS workflow had two issues:

  • PCA errors out when there are 2 samples.
  • Sambamba include overflow to avoid file limit being hit.

@WardDeb
Copy link
Member Author

WardDeb commented Feb 13, 2024

HiC workflow encounters one issue related to outdated HiCExplorer version:
AttributeError: 'Styler' object has no attribute 'render'. Did you mean: '_render'?

Fixed by boosting HiCExplorer in the environment.

@WardDeb WardDeb changed the title Mqc bugfix 2.8.0 Feb 14, 2024
@WardDeb
Copy link
Member Author

WardDeb commented Feb 14, 2024

All workflows tested, renamed to bugfix 2.8.0 as this is now more relevant.

@WardDeb WardDeb merged commit 36e768a into develop Feb 14, 2024
86 checks passed
@WardDeb WardDeb deleted the mqc branch February 15, 2024 08:57
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants