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ScriptStore

Useful scripts without a specific home.

Fixation Index

getFst.r: Default script, bit messy.

getFst_Nei_Wright.r: Calculate via the Nei or Wright method, bit messy.

Tajima's D

getTajimasD.r: R implementation, limited to small datasets.

getTajD.py: Python 3 implementation with inherent multi-threading.

Format Conversion

vcfToSNPs.py: For pulling raw SNP calls from a .vcf file.

Visualisation

makeCovPlot.py: Coverage plot with annotation.

plotVariantHeatmap.r: Variant heatmap with annotation.

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Useful scripts without a specific home.

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