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1. extract_4fds extract_4fds Public

   A pipeline to find & extract 4-fold degenerate sites on a SLURM cluster

   Python 3

2. bird_project bird_project Public

   Scripts used to explore the influence of non-coding regions on evolutionary phenotypic diversity in birds (see Yusuf et al, 2020. Genome Research 30(4); 553-565)

   Python 1

3. scantools_lite scantools_lite Public

   Software to calculate window-based population genetics metrics on a SLURM cluster.

   Python 1

4. ngs_pipe ngs_pipe Public

   A pipeline to process NGS data on a SLURM cluster according to GATK best practice

   Python 1

5. ncbi_download ncbi_download Public

   Software to help automate the bulk downloading of reference genomes from NCBI to a SLURM cluster.

   Python 1

6. sra_download sra_download Public

   Software to help automate the bulk downloading of SRA files from NCBI to a SLURM cluster using the SRA Toolkit.

   Python