Better defaults

mathiser · Jun 24, 2023 · 728c90e · 728c90e
1 parent 3683635
commit 728c90e
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/rt_utils/rtstruct.py b/rt_utils/rtstruct.py
@@ -37,7 +37,7 @@ def add_roi(
  roi_generation_algorithm: Union[str, int] = 0,
  apply_smoothing: Union[str, None] = None, # strings can be "2d" or "3d" or something else if a different smoothing function is used
  smoothing_function = smoothing.pipeline, # Can be any function/set of functions that takes the following parameters
- # # smoothing_function(mask=mask, apply_smoothing=apply_smoothing,
+   # smoothing_function(mask=mask, apply_smoothing=apply_smoothing,
  # smoothing_parameters=smoothing_parameters) -> np.ndarray
  # The returned np.ndarray can be of any integer scalar shape in x and y of the used dicom image.
  # Note that Z direction should not be scaled. For instance CT_image.shape == (512, 512, 150).

diff --git a/rt_utils/smoothing.py b/rt_utils/smoothing.py
@@ -10,8 +10,7 @@
  "filter_iterations": 3,
  "crop_margins": [20, 20, 1],
  "np_kron": {"scaling_factor": 3},
- "ndimage_gaussian_filter": {"sigma": 5},#,
- # "radius": 5},
+ "ndimage_gaussian_filter": {"sigma": 2.3},
  "threshold": {"threshold": 0.5},
 }